RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 TNFSF9P41273 254 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 TMEM50BP56557 158 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 CLDN6P56747 220 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 OR1D5P58170 312 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 SMIM11AP58511 58 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 UBE2G1P62253 170 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 RPL23P62829 140 aaKnown RBP2.64□□□□□ -1.99
VPS35-208ENST00000568612 GNG5P63218 68 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 CX3CL1P78423 397 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 ADORA2A-AS1P86434 159 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 LAMTOR4Q0VGL1 99 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 KLRB1Q12918 225 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 FAM53BQ14153 422 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 C4orf26Q17RF5 130 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 Q5XG85 94 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 C2orf91Q6ZV80 131 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 SPATA12Q7Z6I5 190 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 BAGE3Q86Y29 109 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 BAGE2Q86Y30 109 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 SGPP2Q8IWX5 399 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 TEX45Q8NA69 505 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 OR8B3Q8NGG8 313 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 OR5D14Q8NGL3 314 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 OR4C13Q8NGP0 309 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 OR10J6PQ8NGY7 276 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 MRPL30Q8TCC3 161 aaKnown RBP2.64□□□□□ -1.99
VPS35-208ENST00000568612 ZDHHC19Q8WVZ1 309 aaPredicted RBP2.64□□□□□ -1.99
VPS35-208ENST00000568612 ARPC1AQ92747 370 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 RDH5Q92781 318 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 BORCS7Q96B45 105 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 ZNF501Q96CX3 271 aaPredicted RBP2.64□□□□□ -1.99
VPS35-208ENST00000568612 NEURL3Q96EH8 262 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 ZC2HC1AQ96GY0 325 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 OR8B2Q96RD0 313 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 GFI1Q99684 422 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 PARP12Q9H0J9 701 aaKnown RBP2.64□□□□□ -1.99
VPS35-208ENST00000568612 SH3BGRL3Q9H299 93 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 BEX4Q9NWD9 120 aaPredicted RBP2.64□□□□□ -1.99
VPS35-208ENST00000568612 C1orf123Q9NWV4 160 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 TECRQ9NZ01 308 aaKnown RBP2.64□□□□□ -1.99
VPS35-208ENST00000568612 PRO0461Q9UI25 63 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 PRNDQ9UKY0 176 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 TP53TG1Q9Y2A0 90 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 ZNF835Q9Y2P0 537 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 SSC5DA1L4H1 1573 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 CKAP5Q14008 2032 aa2.64□□□□□ -1.99
VPS35-208ENST00000568612 TMED7-TICAM2A0A0A6YYA0 188 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 A0A0A6YYD5 115 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 FAM90A7PA6NKC0 464 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 SH2D7A6NKC9 451 aaPredicted RBP2.63□□□□□ -1.99
VPS35-208ENST00000568612 CEACAM18A8MTB9 384 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 FAM90A22PA8MWA6 464 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 FAM90A12PA8MX19 464 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 FAM90A23PA8MXZ1 464 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 GGTLC3B5MD39 225 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 TEX22C9J3V5 150 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 H3BMG7 143 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 K7ENP7 123 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 FCN1O00602 326 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 TNFSF12O43508 249 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 ENSAO43768 121 aaKnown RBP2.63□□□□□ -1.99
VPS35-208ENST00000568612 CHST1O43916 411 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 PAGE4O60829 102 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 FCGR3BO75015 233 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 KLF7O75840 302 aaPredicted RBP2.63□□□□□ -1.99
VPS35-208ENST00000568612 STK17BO94768 372 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 IGHV3-7P01780 117 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 RBP4P02753 201 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 MRPL3P09001 348 aaKnown RBP2.63□□□□□ -1.99
VPS35-208ENST00000568612 COX8AP10176 69 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 CPMP14384 443 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 COX7A2P14406 83 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 PRSS3P35030 304 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 RBMXP38159 391 aaKnown RBP2.63□□□□□ -1.99
VPS35-208ENST00000568612 SGSHP51688 502 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 PFN3P60673 137 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 RPS14P62263 151 aaKnown RBP2.63□□□□□ -1.99
VPS35-208ENST00000568612 CCL20P78556 96 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 RPL36AP83881 106 aaKnown RBP2.63□□□□□ -1.99
VPS35-208ENST00000568612 TGFBR3Q03167 851 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 TAF10Q12962 218 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 GAGE2BQ13066 116 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 HES1Q14469 280 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 CDK5R1Q15078 307 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 TAL2Q16559 108 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 VWC2Q2TAL6 325 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 ETDBQ3ZM63 59 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 GGTA1PQ4G0N0 100 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 GAGE2EQ4V326 116 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 TTC32Q5I0X7 151 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 C1orf195Q5TG92 126 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 TSPO2Q5TGU0 170 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 LYSMD4Q5XG99 296 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 HRCT1Q6UXD1 115 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 RFLNAQ6ZTI6 216 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 C18orf65Q6ZTR6 163 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 FAM19A1Q7Z5A9 133 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 TMEM150AQ86TG1 271 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 BPIFA4PQ86YQ2 179 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 ZNF695Q8IW36 515 aa2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms