RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	F11R	Q9Y624	299 aa	Known RBP	11.57	□□□□□ -0.56
CLK3-223	ENST00000568488	AGRN	O00468	2067 aa		11.56	□□□□□ -0.56
CLK3-223	ENST00000568488	TEX50	A0A1B0GTY4	177 aa		11.56	□□□□□ -0.56
CLK3-223	ENST00000568488	EPM2A	B3EWF7	344 aa		11.56	□□□□□ -0.56
CLK3-223	ENST00000568488	APOH	P02749	345 aa	Predicted RBP	11.56	□□□□□ -0.56
CLK3-223	ENST00000568488	CSNK1G2-AS1	Q8NCQ2	148 aa		11.56	□□□□□ -0.56
CLK3-223	ENST00000568488	DMBX1	Q8NFW5	382 aa		11.56	□□□□□ -0.56
CLK3-223	ENST00000568488	TMEM140	Q9NV12	185 aa		11.56	□□□□□ -0.56
CLK3-223	ENST00000568488	ELF5	Q9UKW6	265 aa	Predicted RBP	11.56	□□□□□ -0.56
CLK3-223	ENST00000568488	ERICH4	A6NGS2	130 aa		11.55	□□□□□ -0.56
CLK3-223	ENST00000568488	INAFM2	P0DMQ5	153 aa		11.55	□□□□□ -0.56
CLK3-223	ENST00000568488	HTN3	P15516	51 aa		11.55	□□□□□ -0.56
CLK3-223	ENST00000568488	NQO2	P16083	231 aa		11.55	□□□□□ -0.56
CLK3-223	ENST00000568488	RANBP1	P43487	201 aa		11.55	□□□□□ -0.56
CLK3-223	ENST00000568488	EMP1	P54849	157 aa		11.55	□□□□□ -0.56
CLK3-223	ENST00000568488	TAS2R31	P59538	309 aa		11.55	□□□□□ -0.56
CLK3-223	ENST00000568488	ACTL10	Q5JWF8	245 aa		11.55	□□□□□ -0.56
CLK3-223	ENST00000568488	THOC7	Q6I9Y2	204 aa	Known RBP	11.55	□□□□□ -0.56
CLK3-223	ENST00000568488	ZNF367	Q7RTV3	350 aa		11.55	□□□□□ -0.56
CLK3-223	ENST00000568488	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	11.55	□□□□□ -0.56
CLK3-223	ENST00000568488	SLC25A46	Q96AG3	418 aa		11.55	□□□□□ -0.56
CLK3-223	ENST00000568488	FAM210B	Q96KR6	192 aa		11.55	□□□□□ -0.56
CLK3-223	ENST00000568488	GINS3	Q9BRX5	216 aa		11.55	□□□□□ -0.56
CLK3-223	ENST00000568488	TRAV2	A0A0B4J234	112 aa		11.54	□□□□□ -0.56
CLK3-223	ENST00000568488	SULT1C2	O00338	296 aa		11.54	□□□□□ -0.56
CLK3-223	ENST00000568488	ATP5H	O75947	161 aa		11.54	□□□□□ -0.56
CLK3-223	ENST00000568488	HPRT1	P00492	218 aa		11.54	□□□□□ -0.56
CLK3-223	ENST00000568488	SPART-AS1	P0CW21	52 aa		11.54	□□□□□ -0.56
CLK3-223	ENST00000568488	DTYMK	P23919	212 aa		11.54	□□□□□ -0.56
CLK3-223	ENST00000568488	MFAP4	P55083	255 aa		11.54	□□□□□ -0.56
CLK3-223	ENST00000568488	SPATA12	Q7Z6I5	190 aa		11.54	□□□□□ -0.56
CLK3-223	ENST00000568488	OR1L8	Q8NGR8	309 aa		11.54	□□□□□ -0.56
CLK3-223	ENST00000568488	SECTM1	Q8WVN6	248 aa		11.54	□□□□□ -0.56
CLK3-223	ENST00000568488	NXF2	Q9GZY0	626 aa	Known RBP	11.54	□□□□□ -0.56
CLK3-223	ENST00000568488	RNF167	Q9H6Y7	350 aa		11.54	□□□□□ -0.56
CLK3-223	ENST00000568488	CCL28	Q9NRJ3	127 aa		11.54	□□□□□ -0.56
CLK3-223	ENST00000568488	PSORS1C1	Q9UIG5	152 aa		11.54	□□□□□ -0.56
CLK3-223	ENST00000568488	ZNF688	P0C7X2	276 aa		11.53	□□□□□ -0.56
CLK3-223	ENST00000568488	CNIH2	Q6PI25	160 aa		11.53	□□□□□ -0.56
CLK3-223	ENST00000568488	ZNF773	Q6PK81	442 aa		11.53	□□□□□ -0.56
CLK3-223	ENST00000568488	TOMM20L	Q6UXN7	152 aa		11.53	□□□□□ -0.56
CLK3-223	ENST00000568488	C6orf223	Q8N319	242 aa		11.53	□□□□□ -0.56
CLK3-223	ENST00000568488	BPIFB6	Q8NFQ5	453 aa		11.53	□□□□□ -0.56
CLK3-223	ENST00000568488	STXBP6	Q8NFX7	210 aa		11.53	□□□□□ -0.56
CLK3-223	ENST00000568488	LSM10	Q969L4	123 aa	Known RBP	11.53	□□□□□ -0.56
CLK3-223	ENST00000568488	MISP3	Q96FF7	219 aa		11.53	□□□□□ -0.56
CLK3-223	ENST00000568488	VSIR	Q9H7M9	311 aa		11.53	□□□□□ -0.56
CLK3-223	ENST00000568488	TMED3	Q9Y3Q3	217 aa		11.53	□□□□□ -0.56
CLK3-223	ENST00000568488		V9GY05	133 aa		11.53	□□□□□ -0.56
CLK3-223	ENST00000568488	ARL6IP5	O75915	188 aa		11.52	□□□□□ -0.57
CLK3-223	ENST00000568488	IGHV3-48	P01763	117 aa		11.52	□□□□□ -0.57
CLK3-223	ENST00000568488	CALR	P27797	417 aa	Known RBP	11.52	□□□□□ -0.57
CLK3-223	ENST00000568488	RCN1	Q15293	331 aa		11.52	□□□□□ -0.57
CLK3-223	ENST00000568488	POU2AF1	Q16633	256 aa		11.52	□□□□□ -0.57
CLK3-223	ENST00000568488	TMEM91	Q6ZNR0	172 aa		11.52	□□□□□ -0.57
CLK3-223	ENST00000568488	MND1	Q9BWT6	205 aa		11.52	□□□□□ -0.57
CLK3-223	ENST00000568488	DCSTAMP	Q9H295	470 aa		11.52	□□□□□ -0.57
CLK3-223	ENST00000568488	METTL21EP	A6NDL7	271 aa		11.51	□□□□□ -0.57
CLK3-223	ENST00000568488	RBFOX2	O43251	390 aa	Known RBP eCLIP	11.51	□□□□□ -0.57
CLK3-223	ENST00000568488	GNG7	O60262	68 aa		11.51	□□□□□ -0.57
CLK3-223	ENST00000568488	SPHAR	Q15513	63 aa		11.51	□□□□□ -0.57
CLK3-223	ENST00000568488	CDNF	Q49AH0	187 aa		11.51	□□□□□ -0.57
CLK3-223	ENST00000568488	UFD1	Q92890	307 aa		11.51	□□□□□ -0.57
CLK3-223	ENST00000568488	ATG101	Q9BSB4	218 aa		11.51	□□□□□ -0.57
CLK3-223	ENST00000568488	NDUFA4L2	Q9NRX3	87 aa		11.51	□□□□□ -0.57
CLK3-223	ENST00000568488	XCL2	Q9UBD3	114 aa		11.51	□□□□□ -0.57
CLK3-223	ENST00000568488	NACA	E9PAV3	2078 aa		11.51	□□□□□ -0.57
CLK3-223	ENST00000568488		K7EQG2	157 aa		11.5	□□□□□ -0.57
CLK3-223	ENST00000568488	RPS25	P62851	125 aa	Known RBP	11.5	□□□□□ -0.57
CLK3-223	ENST00000568488	CATR1	Q13166	79 aa		11.5	□□□□□ -0.57
CLK3-223	ENST00000568488	LAIR2	Q6ISS4	152 aa		11.5	□□□□□ -0.57
CLK3-223	ENST00000568488	PQLC1	Q8N2U9	271 aa		11.5	□□□□□ -0.57
CLK3-223	ENST00000568488	TXN2	Q99757	166 aa		11.5	□□□□□ -0.57
CLK3-223	ENST00000568488	YTHDF1	Q9BYJ9	559 aa	Known RBP	11.5	□□□□□ -0.57
CLK3-223	ENST00000568488	ATG5	Q9H1Y0	275 aa		11.5	□□□□□ -0.57
CLK3-223	ENST00000568488	TMEM231	Q9H6L2	316 aa		11.5	□□□□□ -0.57
CLK3-223	ENST00000568488	NSG2	Q9Y328	171 aa		11.5	□□□□□ -0.57
CLK3-223	ENST00000568488	OR51B2	Q9Y5P1	312 aa		11.5	□□□□□ -0.57
CLK3-223	ENST00000568488	FAT1	Q14517	4588 aa		11.5	□□□□□ -0.57
CLK3-223	ENST00000568488	NBDY	A0A0U1RRE5	68 aa		11.49	□□□□□ -0.57
CLK3-223	ENST00000568488	ERVK-16	P61578	105 aa		11.49	□□□□□ -0.57
CLK3-223	ENST00000568488	OR51H1	Q8NH63	302 aa		11.49	□□□□□ -0.57
CLK3-223	ENST00000568488	MOB3A	Q96BX8	217 aa		11.49	□□□□□ -0.57
CLK3-223	ENST00000568488	GRAMD2B	Q96HH9	432 aa		11.49	□□□□□ -0.57
CLK3-223	ENST00000568488	RAB40C	Q96S21	281 aa		11.49	□□□□□ -0.57
CLK3-223	ENST00000568488	C1QTNF4	Q9BXJ3	329 aa		11.49	□□□□□ -0.57
CLK3-223	ENST00000568488		I3L2K1	104 aa		11.48	□□□□□ -0.57
CLK3-223	ENST00000568488	MT-CO2	P00403	227 aa		11.48	□□□□□ -0.57
CLK3-223	ENST00000568488	FGF2	P09038	288 aa		11.48	□□□□□ -0.57
CLK3-223	ENST00000568488	RAB6A	P20340	208 aa		11.48	□□□□□ -0.57
CLK3-223	ENST00000568488	FCGR2C	P31995	323 aa		11.48	□□□□□ -0.57
CLK3-223	ENST00000568488	NUTF2	P61970	127 aa	Known RBP	11.48	□□□□□ -0.57
CLK3-223	ENST00000568488	ARL6IP1	Q15041	203 aa		11.48	□□□□□ -0.57
CLK3-223	ENST00000568488	TMEM88	Q6PEY1	159 aa		11.48	□□□□□ -0.57
CLK3-223	ENST00000568488	C10orf67	Q8IYJ2	551 aa		11.48	□□□□□ -0.57
CLK3-223	ENST00000568488	ZBTB34	Q8NCN2	500 aa		11.48	□□□□□ -0.57
CLK3-223	ENST00000568488	NUDCD2	Q8WVJ2	157 aa		11.48	□□□□□ -0.57
CLK3-223	ENST00000568488	PINX1	Q96BK5	328 aa	Known RBP	11.48	□□□□□ -0.57
CLK3-223	ENST00000568488	TMEM56	Q96MV1	263 aa		11.48	□□□□□ -0.57
CLK3-223	ENST00000568488	NIPSNAP3B	Q9BS92	247 aa		11.48	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms