RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 ZC4H2Q9NQZ6 224 aa11.42□□□□□ -0.58
VPS39-210ENST00000568357 SIGLEC8Q9NYZ4 499 aa11.42□□□□□ -0.58
VPS39-210ENST00000568357 F11RQ9Y624 299 aaKnown RBP11.42□□□□□ -0.58
VPS39-210ENST00000568357 V9GYH0 126 aa11.42□□□□□ -0.58
VPS39-210ENST00000568357 ZNF701M0R085 212 aaPredicted RBP11.41□□□□□ -0.58
VPS39-210ENST00000568357 UCP1P25874 307 aa11.41□□□□□ -0.58
VPS39-210ENST00000568357 HSPE1P61604 102 aaKnown RBP11.41□□□□□ -0.58
VPS39-210ENST00000568357 SURF2Q15527 256 aaPredicted RBP11.41□□□□□ -0.58
VPS39-210ENST00000568357 PRRT1Q99946 306 aa11.41□□□□□ -0.58
VPS39-210ENST00000568357 THYN1Q9P016 225 aa11.41□□□□□ -0.58
VPS39-210ENST00000568357 PEMTQ9UBM1 199 aa11.41□□□□□ -0.58
VPS39-210ENST00000568357 C14orf166Q9Y224 244 aaKnown RBP11.41□□□□□ -0.58
VPS39-210ENST00000568357 SMAD5-AS1Q9Y6J3 95 aa11.41□□□□□ -0.58
VPS39-210ENST00000568357 IGHV3-21A0A0B4J1V1 117 aa11.4□□□□□ -0.58
VPS39-210ENST00000568357 A0A0G2JRQ6 117 aa11.4□□□□□ -0.58
VPS39-210ENST00000568357 IZUMO1RA6ND01 250 aa11.4□□□□□ -0.58
VPS39-210ENST00000568357 LGALS9O00182 355 aa11.4□□□□□ -0.58
VPS39-210ENST00000568357 OR5AC1P0C628 307 aa11.4□□□□□ -0.58
VPS39-210ENST00000568357 GPR183P32249 361 aa11.4□□□□□ -0.58
VPS39-210ENST00000568357 ZNF79Q15937 498 aa11.4□□□□□ -0.58
VPS39-210ENST00000568357 TRIM16LQ309B1 348 aa11.4□□□□□ -0.58
VPS39-210ENST00000568357 PYDC2Q56P42 97 aa11.4□□□□□ -0.58
VPS39-210ENST00000568357 CCDC190Q86UF4 302 aa11.4□□□□□ -0.58
VPS39-210ENST00000568357 Q8N1Y9 231 aa11.4□□□□□ -0.58
VPS39-210ENST00000568357 OR2C3Q8N628 320 aa11.4□□□□□ -0.58
VPS39-210ENST00000568357 VN1R17PQ8TDU5 208 aa11.4□□□□□ -0.58
VPS39-210ENST00000568357 GLYATL2Q8WU03 294 aa11.4□□□□□ -0.58
VPS39-210ENST00000568357 TMEM222Q9H0R3 208 aa11.4□□□□□ -0.58
VPS39-210ENST00000568357 NAA60Q9H7X0 242 aa11.4□□□□□ -0.58
VPS39-210ENST00000568357 SLC2A8Q9NY64 477 aa11.4□□□□□ -0.58
VPS39-210ENST00000568357 TEX13DA0A0J9YY54 714 aaPredicted RBP11.39□□□□□ -0.59
VPS39-210ENST00000568357 C2orf70A6NJV1 201 aa11.39□□□□□ -0.59
VPS39-210ENST00000568357 CYB5BO43169 146 aa11.39□□□□□ -0.59
VPS39-210ENST00000568357 B3GALNT1O75752 331 aa11.39□□□□□ -0.59
VPS39-210ENST00000568357 CDS2O95674 445 aa11.39□□□□□ -0.59
VPS39-210ENST00000568357 FOLR2P14207 255 aa11.39□□□□□ -0.59
VPS39-210ENST00000568357 S100A5P33763 92 aa11.39□□□□□ -0.59
VPS39-210ENST00000568357 AKR1C2P52895 323 aa11.39□□□□□ -0.59
VPS39-210ENST00000568357 PRCDQ00LT1 54 aa11.39□□□□□ -0.59
VPS39-210ENST00000568357 KLF9Q13886 244 aaPredicted RBP11.39□□□□□ -0.59
VPS39-210ENST00000568357 SPINK9Q5DT21 86 aa11.39□□□□□ -0.59
VPS39-210ENST00000568357 Q6ZRM9 215 aa11.39□□□□□ -0.59
VPS39-210ENST00000568357 LHFPL5Q8TAF8 219 aa11.39□□□□□ -0.59
VPS39-210ENST00000568357 SCARB1Q8WTV0 552 aa11.39□□□□□ -0.59
VPS39-210ENST00000568357 TRIM63Q969Q1 353 aa11.39□□□□□ -0.59
VPS39-210ENST00000568357 ASCL2Q99929 193 aa11.39□□□□□ -0.59
VPS39-210ENST00000568357 MCUBQ9NWR8 336 aa11.39□□□□□ -0.59
VPS39-210ENST00000568357 IGHV3-35A0A0C4DH35 117 aa11.38□□□□□ -0.59
VPS39-210ENST00000568357 ZNF320A2RRD8 509 aa11.38□□□□□ -0.59
VPS39-210ENST00000568357 CRYM-AS1A6NIL9 109 aa11.38□□□□□ -0.59
VPS39-210ENST00000568357 F8W735 103 aaPredicted RBP11.38□□□□□ -0.59
VPS39-210ENST00000568357 K7EIM0 57 aa11.38□□□□□ -0.59
VPS39-210ENST00000568357 ST8SIA3O43173 380 aa11.38□□□□□ -0.59
VPS39-210ENST00000568357 FAM106AQ4KMX7 169 aa11.38□□□□□ -0.59
VPS39-210ENST00000568357 UNQ9165/PRO28630Q6UXU0 137 aa11.38□□□□□ -0.59
VPS39-210ENST00000568357 SELENOHQ8IZQ5 122 aaKnown RBP11.38□□□□□ -0.59
VPS39-210ENST00000568357 Q8N402 240 aa11.38□□□□□ -0.59
VPS39-210ENST00000568357 OR1P1Q8NH06 330 aa11.38□□□□□ -0.59
VPS39-210ENST00000568357 TMEM230Q96A57 120 aa11.38□□□□□ -0.59
VPS39-210ENST00000568357 SCP2D1Q9UJQ7 156 aa11.38□□□□□ -0.59
VPS39-210ENST00000568357 OR2T8A6NH00 312 aa11.37□□□□□ -0.59
VPS39-210ENST00000568357 ATG12O94817 140 aa11.37□□□□□ -0.59
VPS39-210ENST00000568357 CBLN1P23435 193 aa11.37□□□□□ -0.59
VPS39-210ENST00000568357 ETV6P41212 452 aa11.37□□□□□ -0.59
VPS39-210ENST00000568357 DEFB114Q30KQ6 69 aa11.37□□□□□ -0.59
VPS39-210ENST00000568357 CD300EQ496F6 205 aaPredicted RBP11.37□□□□□ -0.59
VPS39-210ENST00000568357 TM4SF20Q53R12 229 aa11.37□□□□□ -0.59
VPS39-210ENST00000568357 PLET1Q6UQ28 207 aa11.37□□□□□ -0.59
VPS39-210ENST00000568357 OR1L6Q8NGR2 347 aa11.37□□□□□ -0.59
VPS39-210ENST00000568357 CACNG8Q8WXS5 425 aa11.37□□□□□ -0.59
VPS39-210ENST00000568357 RRNAD1Q96FB5 475 aaKnown RBP11.37□□□□□ -0.59
VPS39-210ENST00000568357 PLEKHA3Q9HB20 300 aa11.37□□□□□ -0.59
VPS39-210ENST00000568357 C21orf62Q9NYP8 219 aa11.37□□□□□ -0.59
VPS39-210ENST00000568357 SELENOKQ9Y6D0 94 aa11.37□□□□□ -0.59
VPS39-210ENST00000568357 SORL1Q92673 2214 aa11.36□□□□□ -0.59
VPS39-210ENST00000568357 TMEM213A2RRL7 107 aa11.36□□□□□ -0.59
VPS39-210ENST00000568357 ZNF785A8K8V0 405 aa11.36□□□□□ -0.59
VPS39-210ENST00000568357 I3L2K1 104 aa11.36□□□□□ -0.59
VPS39-210ENST00000568357 TGOLN2O43493 480 aa11.36□□□□□ -0.59
VPS39-210ENST00000568357 ERHP84090 104 aaKnown RBP11.36□□□□□ -0.59
VPS39-210ENST00000568357 DHODHQ02127 395 aa11.36□□□□□ -0.59
VPS39-210ENST00000568357 LCN12Q6JVE5 192 aa11.36□□□□□ -0.59
VPS39-210ENST00000568357 TOMM5Q8N4H5 51 aa11.36□□□□□ -0.59
VPS39-210ENST00000568357 ZNF114Q8NC26 417 aa11.36□□□□□ -0.59
VPS39-210ENST00000568357 RBPMSQ93062 196 aaKnown RBP11.36□□□□□ -0.59
VPS39-210ENST00000568357 SCGB3A2Q96PL1 93 aa11.36□□□□□ -0.59
VPS39-210ENST00000568357 CHRDL1Q9BU40 450 aa11.36□□□□□ -0.59
VPS39-210ENST00000568357 PRR13Q9NZ81 148 aa11.36□□□□□ -0.59
VPS39-210ENST00000568357 TMEM56-RWDD3S4R434 201 aa11.36□□□□□ -0.59
VPS39-210ENST00000568357 DNAH1Q9P2D7 4330 aa11.36□□□□□ -0.59
VPS39-210ENST00000568357 A8MWP6 167 aa11.35□□□□□ -0.59
VPS39-210ENST00000568357 INS-IGF2F8WCM5 200 aa11.35□□□□□ -0.59
VPS39-210ENST00000568357 IFNA17P01571 189 aa11.35□□□□□ -0.59
VPS39-210ENST00000568357 FRMD6-AS1P0C7T7 363 aa11.35□□□□□ -0.59
VPS39-210ENST00000568357 NHLRC4P0CG21 123 aaPredicted RBP11.35□□□□□ -0.59
VPS39-210ENST00000568357 ADMP35318 185 aa11.35□□□□□ -0.59
VPS39-210ENST00000568357 TMEM187Q14656 261 aa11.35□□□□□ -0.59
VPS39-210ENST00000568357 TMEM268Q5VZI3 342 aa11.35□□□□□ -0.59
VPS39-210ENST00000568357 SBSPONQ8IVN8 264 aa11.35□□□□□ -0.59
VPS39-210ENST00000568357 SGPP2Q8IWX5 399 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms