RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 C1orf162Q8NEQ5 155 aaPredicted RBP10.9□□□□□ -0.66
VPS4A-204ENST00000566354 RNF2Q99496 336 aa10.9□□□□□ -0.66
VPS4A-204ENST00000566354 TMEM204Q9BSN7 226 aa10.9□□□□□ -0.66
VPS4A-204ENST00000566354 MS4A5Q9H3V2 200 aa10.9□□□□□ -0.66
VPS4A-204ENST00000566354 GNG12Q9UBI6 72 aa10.9□□□□□ -0.66
VPS4A-204ENST00000566354 JPT1Q9UK76 154 aa10.9□□□□□ -0.66
VPS4A-204ENST00000566354 HEATR1Q9H583 2144 aaKnown RBP10.9□□□□□ -0.66
VPS4A-204ENST00000566354 TRAV9-1A0A075B6T8 112 aa10.9□□□□□ -0.67
VPS4A-204ENST00000566354 KIR2DL5BA0A0G2JN68 375 aa10.9□□□□□ -0.67
VPS4A-204ENST00000566354 KIR2DL5BA0A0G2JPC4 375 aa10.9□□□□□ -0.67
VPS4A-204ENST00000566354 PRDX2P32119 198 aa10.9□□□□□ -0.67
VPS4A-204ENST00000566354 CA7P43166 264 aa10.9□□□□□ -0.67
VPS4A-204ENST00000566354 FAM27E3Q08E93 113 aa10.9□□□□□ -0.67
VPS4A-204ENST00000566354 MIC13Q5XKP0 118 aa10.9□□□□□ -0.67
VPS4A-204ENST00000566354 KIR2DL5AQ8N109 375 aa10.9□□□□□ -0.67
VPS4A-204ENST00000566354 TMEM256Q8N2U0 113 aa10.9□□□□□ -0.67
VPS4A-204ENST00000566354 OR10G8Q8NGN5 311 aa10.9□□□□□ -0.67
VPS4A-204ENST00000566354 SDSLQ96GA7 329 aa10.9□□□□□ -0.67
VPS4A-204ENST00000566354 VKORC1Q9BQB6 163 aa10.9□□□□□ -0.67
VPS4A-204ENST00000566354 DCTN5Q9BTE1 182 aa10.9□□□□□ -0.67
VPS4A-204ENST00000566354 NPVFQ9HCQ7 196 aa10.9□□□□□ -0.67
VPS4A-204ENST00000566354 RNF24Q9Y225 148 aa10.9□□□□□ -0.67
VPS4A-204ENST00000566354 YPEL1O60688 119 aa10.89□□□□□ -0.67
VPS4A-204ENST00000566354 GCH1P30793 250 aa10.89□□□□□ -0.67
VPS4A-204ENST00000566354 RELBQ01201 579 aa10.89□□□□□ -0.67
VPS4A-204ENST00000566354 MZT1Q08AG7 82 aa10.89□□□□□ -0.67
VPS4A-204ENST00000566354 EDDM3AQ14507 147 aa10.89□□□□□ -0.67
VPS4A-204ENST00000566354 LTC4SQ16873 150 aa10.89□□□□□ -0.67
VPS4A-204ENST00000566354 ZNF718Q3SXZ3 478 aa10.89□□□□□ -0.67
VPS4A-204ENST00000566354 C1orf194Q5T5A4 169 aa10.89□□□□□ -0.67
VPS4A-204ENST00000566354 TEX38Q6PEX7 206 aa10.89□□□□□ -0.67
VPS4A-204ENST00000566354 OCC1Q8TAD7 63 aa10.89□□□□□ -0.67
VPS4A-204ENST00000566354 ZNF48Q96MX3 618 aaPredicted RBP10.89□□□□□ -0.67
VPS4A-204ENST00000566354 MS4A10Q96PG2 267 aa10.89□□□□□ -0.67
VPS4A-204ENST00000566354 YPEL2Q96QA6 119 aa10.89□□□□□ -0.67
VPS4A-204ENST00000566354 SCO2A0A1W2PP80 73 aa10.89□□□□□ -0.67
VPS4A-204ENST00000566354 M0R1X1 148 aa10.89□□□□□ -0.67
VPS4A-204ENST00000566354 OR10J1P30954 320 aa10.89□□□□□ -0.67
VPS4A-204ENST00000566354 FABP6P51161 128 aa10.89□□□□□ -0.67
VPS4A-204ENST00000566354 FAM90A1Q86YD7 464 aa10.89□□□□□ -0.67
VPS4A-204ENST00000566354 LRRC29Q8WV35 223 aa10.89□□□□□ -0.67
VPS4A-204ENST00000566354 RND1Q92730 232 aa10.89□□□□□ -0.67
VPS4A-204ENST00000566354 NAGKQ9UJ70 344 aa10.89□□□□□ -0.67
VPS4A-204ENST00000566354 LSM4Q9Y4Z0 139 aaKnown RBP10.89□□□□□ -0.67
VPS4A-204ENST00000566354 BRS3P32247 399 aa10.88□□□□□ -0.67
VPS4A-204ENST00000566354 KIR2DS2P43631 304 aa10.88□□□□□ -0.67
VPS4A-204ENST00000566354 RPL19P84098 196 aaKnown RBP10.88□□□□□ -0.67
VPS4A-204ENST00000566354 PSG3Q16557 428 aa10.88□□□□□ -0.67
VPS4A-204ENST00000566354 CR1LQ2VPA4 569 aa10.88□□□□□ -0.67
VPS4A-204ENST00000566354 ABHD12Q8N2K0 398 aa10.88□□□□□ -0.67
VPS4A-204ENST00000566354 Q8TCH9 128 aa10.88□□□□□ -0.67
VPS4A-204ENST00000566354 S1PR3Q99500 378 aa10.88□□□□□ -0.67
VPS4A-204ENST00000566354 CCL21O00585 134 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 MT-CO2P00403 227 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 SCGB1A1P11684 91 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 GCHFRP30047 84 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 ADMP35318 185 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 RHOBP62745 196 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 VKORC1L1Q8N0U8 176 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 PPP1R35Q8TAP8 253 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 ZNF430Q9H8G1 570 aaPredicted RBP10.87□□□□□ -0.67
VPS4A-204ENST00000566354 TMEM140Q9NV12 185 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 HCFC1P51610 2035 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 MGST3O14880 152 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 NUPR1O60356 82 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 CECR9P0C854 216 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 PAFAH1B2P68402 229 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 ZNF90Q03938 601 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 MBNL2Q5VZF2 373 aaKnown RBP10.87□□□□□ -0.67
VPS4A-204ENST00000566354 VHLLQ6RSH7 139 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 C22orf34Q6ZV56 151 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 TCF23Q7RTU1 214 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 C1orf174Q8IYL3 243 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 CMTM2Q8TAZ6 248 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 ALKBH7Q9BT30 221 aaPredicted RBP10.87□□□□□ -0.67
VPS4A-204ENST00000566354 IL36BQ9NZH7 164 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 FZR1Q9UM11 496 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 TCF19Q9Y242 345 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 POLR3KQ9Y2Y1 108 aaPredicted RBP10.87□□□□□ -0.67
VPS4A-204ENST00000566354 YTHDF2Q9Y5A9 579 aaKnown RBP10.87□□□□□ -0.67
VPS4A-204ENST00000566354 LY96Q9Y6Y9 160 aa10.87□□□□□ -0.67
VPS4A-204ENST00000566354 C9JCJ5 164 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 TOMM40O96008 361 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 IRF2P14316 349 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 LOXL3P58215 753 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 SELENOVP59797 346 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 RPL31P62899 125 aaKnown RBP10.86□□□□□ -0.67
VPS4A-204ENST00000566354 RAB31Q13636 194 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 EFNB3Q15768 340 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 RPL39P5Q59GN2 51 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 TEPPQ6URK8 271 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 PLPPR2Q96GM1 343 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 FAM234AQ9H0X4 552 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 JKAMPQ9P055 326 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 SMPXQ9UHP9 88 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 SLC25A15Q9Y619 301 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 SPTBN1Q01082 2364 aaKnown RBP10.86□□□□□ -0.67
VPS4A-204ENST00000566354 TRAV3A0A0B4J244 114 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 A0A1B0GUS0 222 aa10.86□□□□□ -0.67
VPS4A-204ENST00000566354 F2RL2O00254 374 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms