RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 RND2P52198 227 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 APOC4P55056 127 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 ISL1P61371 349 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 PRDX1Q06830 199 aaKnown RBP4.05□□□□□ -1.76
VPS35-205ENST00000563984 ARFRP1Q13795 201 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 LAGE3Q14657 143 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 TMEM52BQ4KMG9 183 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 C9orf153Q5TBE3 101 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 LCN12Q6JVE5 192 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 ZNF880Q6PDB4 577 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 TMEM14EPQ6UXP3 125 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 Q6ZVH6 145 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 SMIM5Q71RC9 77 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 TMEM150AQ86TG1 271 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 ZNF329Q86UD4 541 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 C10orf111Q8N326 155 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 C10orf126Q8N4M7 172 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 OR4X2Q8NGF9 303 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 OR4K13Q8NH42 304 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 SCGB1C1Q8TD33 95 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 C2orf15Q8WU43 125 aaKnown RBP4.05□□□□□ -1.76
VPS35-205ENST00000563984 DLX4Q92988 240 aaPredicted RBP4.05□□□□□ -1.76
VPS35-205ENST00000563984 MRPL24Q96A35 216 aaKnown RBP4.05□□□□□ -1.76
VPS35-205ENST00000563984 TBL1YQ9BQ87 522 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 RABAC1Q9UI14 185 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 USP54Q70EL1 1684 aa4.05□□□□□ -1.76
VPS35-205ENST00000563984 DOCK3Q8IZD9 2030 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 NHSL1Q5SYE7 1610 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 PTPN23Q9H3S7 1636 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 A0A087WWV3 80 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 FXYD6-FXYD2A0A087WZ82 144 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 TRDV1A0A1B0GX56 115 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 NAP1L6A6NFF2 107 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 KNCNA6PVL3 124 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 UMAD1C9J7I0 102 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 K7EMT4 169 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 UQCRQO14949 82 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 ANGPTL7O43827 346 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 LMX1BO60663 402 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 NDUFS7O75251 213 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 NUDT14O95848 222 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 NAPSAO96009 420 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 MT-ATP8P03928 68 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 ATP5G1P05496 136 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 LINC00271P0C7V0 271 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 FABP2P12104 132 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 SLC25A4P12235 298 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 CA6P23280 308 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 PRSS3P35030 304 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 CA7P43166 264 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 VDAC2P45880 294 aaPredicted RBP4.04□□□□□ -1.76
VPS35-205ENST00000563984 ATP5G3P48201 142 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 ATP4BP51164 291 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 SUB1P53999 127 aaKnown RBP eCLIP4.04□□□□□ -1.76
VPS35-205ENST00000563984 ATP5G2Q06055 141 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 EIF3IQ13347 325 aaKnown RBP4.04□□□□□ -1.76
VPS35-205ENST00000563984 TGIF1Q15583 401 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 C12orf74Q32Q52 190 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 KIAA1644Q3SXP7 199 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 VMA21Q3ZAQ7 101 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 BVES-AS1Q5T3Y7 98 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 FKBP1CQ5VVH2 108 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 IGFL2Q6UWQ7 119 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 C9orf139Q6ZV77 190 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 ATOH7Q8N100 152 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 SLC25A45Q8N413 288 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 LRTM2Q8N967 370 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 OR10AG1Q8NH19 301 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 FGF14Q92915 247 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 MAL2Q969L2 176 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 ELSPBP1Q96BH3 223 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 PMCHL2Q9BQD1 86 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 TM2D1Q9BX74 207 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 FXYD6Q9H0Q3 95 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 TAAR2Q9P1P5 351 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 WRAP73Q9P2S5 460 aaPredicted RBP4.04□□□□□ -1.76
VPS35-205ENST00000563984 CACNG5Q9UF02 275 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 SPCS1Q9Y6A9 102 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 DOCK5Q9H7D0 1870 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 CITO14578 2027 aa4.04□□□□□ -1.76
VPS35-205ENST00000563984 AHDC1Q5TGY3 1603 aaPredicted RBP4.03□□□□□ -1.76
VPS35-205ENST00000563984 EIF2AK4Q9P2K8 1649 aaKnown RBP4.03□□□□□ -1.76
VPS35-205ENST00000563984 CDC42BPGQ6DT37 1551 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 SBF2Q86WG5 1849 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 NCBP2LA6PVI3 153 aaKnown RBP4.03□□□□□ -1.76
VPS35-205ENST00000563984 CREBL2O60519 120 aaPredicted RBP4.03□□□□□ -1.76
VPS35-205ENST00000563984 PITX3O75364 302 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 SNCGO76070 127 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 HLA-DRB1P01911 266 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 FCGR3AP08637 254 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 CXCL1P09341 107 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 PSMB8P28062 276 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 ASIPP42127 132 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 RPS24P62847 133 aaKnown RBP4.03□□□□□ -1.76
VPS35-205ENST00000563984 HBG1P69891 147 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 HBG2P69892 147 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 CX3CL1P78423 397 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 ZNF90Q03938 601 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 DIAPH2-AS1Q14236 149 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 RRN3P1Q2M238 152 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms