RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 AURKAIP1Q9NWT8 199 aaPredicted RBP4.42□□□□□ -1.7
VPS13C-209ENST00000560637 FBXL7Q9UJT9 491 aa4.42□□□□□ -1.7
VPS13C-209ENST00000560637 FAM181BA6NEQ2 426 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 F8W036 122 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 JTBO76095 146 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 LHBP01229 141 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 LMO1P25800 156 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 RAG2P55895 527 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 SPCS3P61009 180 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 B2MP61769 119 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 SLC35B1P78383 322 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 BLOC1S1P78537 153 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 DNM1P46Q6ZS02 220 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 COMMD7Q86VX2 200 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 SIGLECL1Q8N7X8 197 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 RXFP4Q8TDU9 374 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 OR4C12Q96R67 309 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 NPFFR1Q9GZQ6 430 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 RFNGQ9Y644 331 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 KPTNQ9Y664 436 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 EXPH5Q8NEV8 1989 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 TRAV20A0A0B4J274 112 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 RPS10-NUDT3A0A1W2PQS6 291 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 INAFM1C9JVW0 142 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 C15orf65H3BRN8 121 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 IGKV1-5P01602 117 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 RPLP1P05386 114 aaKnown RBP4.41□□□□□ -1.7
VPS13C-209ENST00000560637 FHITP49789 147 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 BLCAPP62952 87 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 LRRC75BQ2VPJ9 315 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 LEMD1Q68G75 181 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 SLC25A48Q6ZT89 311 aaKnown RBP4.41□□□□□ -1.7
VPS13C-209ENST00000560637 OR4P4Q8NGL7 312 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 OSR1Q8TAX0 266 aaPredicted RBP4.41□□□□□ -1.7
VPS13C-209ENST00000560637 DYNLRB2Q8TF09 96 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 TMEM147Q9BVK8 224 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 DBX1A6NMT0 343 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 H0YJW9 148 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 CD1BP29016 333 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 FCGR2BP31994 310 aaPredicted RBP4.41□□□□□ -1.7
VPS13C-209ENST00000560637 RAB4BP61018 213 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 LGALSLQ3ZCW2 172 aaPredicted RBP4.41□□□□□ -1.7
VPS13C-209ENST00000560637 PDPNQ86YL7 162 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 BPIFCQ8NFQ6 507 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 SAT2Q96F10 170 aaPredicted RBP4.41□□□□□ -1.7
VPS13C-209ENST00000560637 UHRF2Q96PU4 802 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 SH3BGRL3Q9H299 93 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 SLC2A8Q9NY64 477 aa4.41□□□□□ -1.7
VPS13C-209ENST00000560637 UBR5O95071 2799 aaPredicted RBP4.41□□□□□ -1.7
VPS13C-209ENST00000560637 RRHO14718 337 aa4.4□□□□□ -1.7
VPS13C-209ENST00000560637 VENTXO95231 258 aa4.4□□□□□ -1.7
VPS13C-209ENST00000560637 IFNA1P01562 189 aa4.4□□□□□ -1.7
VPS13C-209ENST00000560637 IL4P05112 153 aa4.4□□□□□ -1.7
VPS13C-209ENST00000560637 LINC00869P0C866 280 aa4.4□□□□□ -1.7
VPS13C-209ENST00000560637 CXCL2P19875 107 aa4.4□□□□□ -1.7
VPS13C-209ENST00000560637 ATP6V0CP27449 155 aa4.4□□□□□ -1.7
VPS13C-209ENST00000560637 SULT1A1P50225 295 aa4.4□□□□□ -1.7
VPS13C-209ENST00000560637 UCP3P55916 312 aa4.4□□□□□ -1.7
VPS13C-209ENST00000560637 TAS2R30P59541 319 aa4.4□□□□□ -1.7
VPS13C-209ENST00000560637 LMO4P61968 165 aa4.4□□□□□ -1.7
VPS13C-209ENST00000560637 UBA52P62987 128 aaKnown RBP4.4□□□□□ -1.7
VPS13C-209ENST00000560637 RHOGP84095 191 aa4.4□□□□□ -1.7
VPS13C-209ENST00000560637 SCGB2A2Q13296 93 aa4.4□□□□□ -1.7
VPS13C-209ENST00000560637 PSG5Q15238 335 aa4.4□□□□□ -1.7
VPS13C-209ENST00000560637 CRIP3Q6Q6R5 217 aa4.4□□□□□ -1.7
VPS13C-209ENST00000560637 STXBP6Q8NFX7 210 aa4.4□□□□□ -1.7
VPS13C-209ENST00000560637 OR4F5Q8NH21 305 aa4.4□□□□□ -1.7
VPS13C-209ENST00000560637 LSM10Q969L4 123 aaKnown RBP4.4□□□□□ -1.7
VPS13C-209ENST00000560637 RITA1Q96K30 269 aa4.4□□□□□ -1.7
VPS13C-209ENST00000560637 OR4F4Q96R69 305 aa4.4□□□□□ -1.7
VPS13C-209ENST00000560637 CABLES2Q9BTV7 478 aa4.4□□□□□ -1.7
VPS13C-209ENST00000560637 ALX4Q9H161 411 aaPredicted RBP4.4□□□□□ -1.7
VPS13C-209ENST00000560637 CENPVL3A0A0U1RRI6 287 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 IGSF23A1L1A6 192 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 SRRM4A7MD48 611 aaKnown RBP4.4□□□□□ -1.71
VPS13C-209ENST00000560637 AKR1C3P42330 323 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 VDAC2P45880 294 aaPredicted RBP4.4□□□□□ -1.71
VPS13C-209ENST00000560637 RANP62826 216 aaKnown RBP4.4□□□□□ -1.71
VPS13C-209ENST00000560637 RPEL1Q2QD12 228 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 LHFPL1Q86WI0 220 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 ZNF680Q8NEM1 530 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 OR10G4Q8NGN3 311 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 OR10G9Q8NGN4 311 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 OR10G7Q8NGN6 311 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 OR4A5Q8NH83 315 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 RNF141Q8WVD5 230 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 WFDC12Q8WWY7 111 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 BSCL2Q96G97 398 aaPredicted RBP4.4□□□□□ -1.71
VPS13C-209ENST00000560637 GINS3Q9BRX5 216 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 TEX15Q9BXT5 2789 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 IGHV3OR16-12A0A075B7B8 117 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 M0R1W7 72 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 BCL2L11O43521 198 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 UBE2E1P51965 193 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 RHOBP62745 196 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 ACOT6Q3I5F7 207 aaPredicted RBP4.4□□□□□ -1.71
VPS13C-209ENST00000560637 Q8WTZ3 238 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 C18orf12Q96KH6 178 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 PRSS22Q9GZN4 317 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 MED9Q9NWA0 146 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms