RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 MSGN1A6NI15 193 aa11.03□□□□□ -0.64
LDLR-213ENST00000560502 C15orf61A6NNL5 157 aa11.03□□□□□ -0.64
LDLR-213ENST00000560502 H7C2Y5 167 aa11.03□□□□□ -0.64
LDLR-213ENST00000560502 SHOXO15266 292 aa11.03□□□□□ -0.64
LDLR-213ENST00000560502 IL6RP08887 468 aaPredicted RBP11.03□□□□□ -0.64
LDLR-213ENST00000560502 CD24P25063 80 aa11.03□□□□□ -0.64
LDLR-213ENST00000560502 LINC00205P59089 165 aa11.03□□□□□ -0.64
LDLR-213ENST00000560502 SPCS3P61009 180 aa11.03□□□□□ -0.64
LDLR-213ENST00000560502 UBE2KP61086 200 aa11.03□□□□□ -0.64
LDLR-213ENST00000560502 TPTE2P1Q5T6R2 138 aa11.03□□□□□ -0.64
LDLR-213ENST00000560502 STX12Q86Y82 276 aa11.03□□□□□ -0.64
LDLR-213ENST00000560502 OR4X2Q8NGF9 303 aa11.03□□□□□ -0.64
LDLR-213ENST00000560502 OR8H1Q8NGG4 311 aa11.03□□□□□ -0.64
LDLR-213ENST00000560502 HARBI1Q96MB7 349 aa11.03□□□□□ -0.64
LDLR-213ENST00000560502 RBM14Q96PK6 669 aaKnown RBP11.03□□□□□ -0.64
LDLR-213ENST00000560502 CLCC1Q96S66 551 aa11.03□□□□□ -0.64
LDLR-213ENST00000560502 IGHV1-3A0A0C4DH29 117 aa11.02□□□□□ -0.65
LDLR-213ENST00000560502 RBMXL2O75526 392 aaKnown RBP11.02□□□□□ -0.65
LDLR-213ENST00000560502 SPDEFO95238 335 aa11.02□□□□□ -0.65
LDLR-213ENST00000560502 TPT1P13693 172 aaKnown RBP11.02□□□□□ -0.65
LDLR-213ENST00000560502 BRS3P32247 399 aa11.02□□□□□ -0.65
LDLR-213ENST00000560502 CAV2P51636 162 aa11.02□□□□□ -0.65
LDLR-213ENST00000560502 RPP30P78346 268 aaKnown RBP11.02□□□□□ -0.65
LDLR-213ENST00000560502 NDUFA5Q16718 116 aa11.02□□□□□ -0.65
LDLR-213ENST00000560502 VMA21Q3ZAQ7 101 aa11.02□□□□□ -0.65
LDLR-213ENST00000560502 OR4A47Q6IF82 309 aa11.02□□□□□ -0.65
LDLR-213ENST00000560502 ETV3LQ6ZN32 361 aa11.02□□□□□ -0.65
LDLR-213ENST00000560502 PUSL1Q8N0Z8 303 aaKnown RBP11.02□□□□□ -0.65
LDLR-213ENST00000560502 STPG2Q8N412 459 aa11.02□□□□□ -0.65
LDLR-213ENST00000560502 ZNF680Q8NEM1 530 aa11.02□□□□□ -0.65
LDLR-213ENST00000560502 TMEM14BQ9NUH8 114 aa11.02□□□□□ -0.65
LDLR-213ENST00000560502 UBQLN2Q9UHD9 624 aa11.02□□□□□ -0.65
LDLR-213ENST00000560502 BORCS7-ASMTA0A0B4J1R7 106 aa11.01□□□□□ -0.65
LDLR-213ENST00000560502 A0A1W2PPI3 338 aa11.01□□□□□ -0.65
LDLR-213ENST00000560502 SH2D7A6NKC9 451 aaPredicted RBP11.01□□□□□ -0.65
LDLR-213ENST00000560502 JTBO76095 146 aa11.01□□□□□ -0.65
LDLR-213ENST00000560502 IGKV1-16P04430 117 aa11.01□□□□□ -0.65
LDLR-213ENST00000560502 OR9G9P0C7N8 305 aa11.01□□□□□ -0.65
LDLR-213ENST00000560502 CD1BP29016 333 aa11.01□□□□□ -0.65
LDLR-213ENST00000560502 HOXD3P31249 432 aaPredicted RBP11.01□□□□□ -0.65
LDLR-213ENST00000560502 REG1BP48304 166 aa11.01□□□□□ -0.65
LDLR-213ENST00000560502 EWSR1Q01844 656 aaKnown RBP eCLIP11.01□□□□□ -0.656e-6■■■■□ 22.1
LDLR-213ENST00000560502 ZNF266Q14584 549 aa11.01□□□□□ -0.65
LDLR-213ENST00000560502 IZUMO4Q1ZYL8 232 aa11.01□□□□□ -0.65
LDLR-213ENST00000560502 EIF5AL1Q6IS14 154 aaKnown RBP11.01□□□□□ -0.65
LDLR-213ENST00000560502 TMEM252Q8N6L7 170 aa11.01□□□□□ -0.65
LDLR-213ENST00000560502 OR5B3Q8NH48 314 aa11.01□□□□□ -0.65
LDLR-213ENST00000560502 TSNAXQ99598 290 aaKnown RBP11.01□□□□□ -0.65
LDLR-213ENST00000560502 B9D2Q9BPU9 175 aa11.01□□□□□ -0.65
LDLR-213ENST00000560502 ZNF471Q9BX82 626 aaPredicted RBP11.01□□□□□ -0.65
LDLR-213ENST00000560502 MAGT1Q9H0U3 335 aa11.01□□□□□ -0.65
LDLR-213ENST00000560502 RBKSQ9H477 322 aa11.01□□□□□ -0.65
LDLR-213ENST00000560502 UPK2O00526 184 aa11□□□□□ -0.65
LDLR-213ENST00000560502 KBTBD11O94819 623 aa11□□□□□ -0.65
LDLR-213ENST00000560502 SAA1P0DJI8 122 aaPredicted RBP11□□□□□ -0.65
LDLR-213ENST00000560502 SULT1A1P50225 295 aa11□□□□□ -0.65
LDLR-213ENST00000560502 PAX9P55771 341 aa11□□□□□ -0.65
LDLR-213ENST00000560502 ATP5IP56385 69 aaPredicted RBP11□□□□□ -0.65
LDLR-213ENST00000560502 HBG1P69891 147 aa11□□□□□ -0.65
LDLR-213ENST00000560502 HBG2P69892 147 aa11□□□□□ -0.65
LDLR-213ENST00000560502 DEFB121Q5J5C9 76 aa11□□□□□ -0.65
LDLR-213ENST00000560502 MRPL41Q8IXM3 137 aaKnown RBP11□□□□□ -0.65
LDLR-213ENST00000560502 TEX45Q8NA69 505 aa11□□□□□ -0.65
LDLR-213ENST00000560502 TMEM167AQ8TBQ9 72 aa11□□□□□ -0.65
LDLR-213ENST00000560502 DTD1Q8TEA8 209 aa11□□□□□ -0.65
LDLR-213ENST00000560502 SCARB1Q8WTV0 552 aa11□□□□□ -0.65
LDLR-213ENST00000560502 ST8SIA2Q92186 375 aa11□□□□□ -0.65
LDLR-213ENST00000560502 GPR61Q9BZJ8 451 aa11□□□□□ -0.65
LDLR-213ENST00000560502 PSENENQ9NZ42 101 aa11□□□□□ -0.65
LDLR-213ENST00000560502 FBXL17Q9UF56 701 aa11□□□□□ -0.65
LDLR-213ENST00000560502 STAB2Q8WWQ8 2551 aa10.99□□□□□ -0.65
LDLR-213ENST00000560502 IGSF23A1L1A6 192 aa10.99□□□□□ -0.65
LDLR-213ENST00000560502 CEBPZOSA8MTT3 80 aa10.99□□□□□ -0.65
LDLR-213ENST00000560502 M0QZK8 103 aa10.99□□□□□ -0.65
LDLR-213ENST00000560502 DFFBO76075 338 aa10.99□□□□□ -0.65
LDLR-213ENST00000560502 TMEM50AO95807 157 aa10.99□□□□□ -0.65
LDLR-213ENST00000560502 IFNA17P01571 189 aa10.99□□□□□ -0.65
LDLR-213ENST00000560502 HSPE1P61604 102 aaKnown RBP10.99□□□□□ -0.65
LDLR-213ENST00000560502 RPS16P62249 146 aaKnown RBP10.99□□□□□ -0.65
LDLR-213ENST00000560502 EXOSC2Q13868 293 aaKnown RBP10.99□□□□□ -0.65
LDLR-213ENST00000560502 DIAPH2-AS1Q14236 149 aa10.99□□□□□ -0.65
LDLR-213ENST00000560502 KHDC1LQ5JSQ8 128 aa10.99□□□□□ -0.65
LDLR-213ENST00000560502 SSX9Q7RTT3 188 aa10.99□□□□□ -0.65
LDLR-213ENST00000560502 MOB3BQ86TA1 216 aa10.99□□□□□ -0.65
LDLR-213ENST00000560502 BAP18Q8IXM2 172 aa10.99□□□□□ -0.65
LDLR-213ENST00000560502 UBAC2Q8NBM4 344 aa10.99□□□□□ -0.65
LDLR-213ENST00000560502 WWC2-AS2Q96NR7 200 aa10.99□□□□□ -0.65
LDLR-213ENST00000560502 QTRT1Q9BXR0 403 aaKnown RBP10.99□□□□□ -0.65
LDLR-213ENST00000560502 HIPK2Q9H2X6 1198 aa10.99□□□□□ -0.65
LDLR-213ENST00000560502 PSMB11A5LHX3 300 aa10.98□□□□□ -0.65
LDLR-213ENST00000560502 FAM24AA6NFZ4 105 aa10.98□□□□□ -0.65
LDLR-213ENST00000560502 INS-IGF2F8WCM5 200 aa10.98□□□□□ -0.65
LDLR-213ENST00000560502 MAS1LP35410 378 aa10.98□□□□□ -0.65
LDLR-213ENST00000560502 OR2B8PP59922 312 aa10.98□□□□□ -0.65
LDLR-213ENST00000560502 CD69Q07108 199 aa10.98□□□□□ -0.65
LDLR-213ENST00000560502 VKORC1L1Q8N0U8 176 aa10.98□□□□□ -0.65
LDLR-213ENST00000560502 LRRC20Q8TCA0 184 aa10.98□□□□□ -0.65
LDLR-213ENST00000560502 ENY2Q9NPA8 101 aa10.98□□□□□ -0.65
LDLR-213ENST00000560502 CYTL1Q9NRR1 136 aa10.98□□□□□ -0.65
LDLR-213ENST00000560502 MOB4Q9Y3A3 225 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms