RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 A0A1B0GU03 582 aa16.89■□□□□ 0.29
SNX1-210ENST00000560260 OR2J3O76001 311 aa16.89■□□□□ 0.29
SNX1-210ENST00000560260 SPCS3P61009 180 aa16.89■□□□□ 0.29
SNX1-210ENST00000560260 ETV3LQ6ZN32 361 aa16.89■□□□□ 0.29
SNX1-210ENST00000560260 HSD17B13Q7Z5P4 300 aaPredicted RBP16.89■□□□□ 0.29
SNX1-210ENST00000560260 OR2C3Q8N628 320 aa16.89■□□□□ 0.29
SNX1-210ENST00000560260 OR52E5Q8NH55 327 aa16.89■□□□□ 0.29
SNX1-210ENST00000560260 UBE2E2Q96LR5 201 aa16.89■□□□□ 0.29
SNX1-210ENST00000560260 OR5B12Q96R08 314 aa16.89■□□□□ 0.29
SNX1-210ENST00000560260 IGLV11-55A0A075B6I3 123 aa16.88■□□□□ 0.29
SNX1-210ENST00000560260 CCSO14618 274 aa16.88■□□□□ 0.29
SNX1-210ENST00000560260 IGHV3-11P01762 117 aa16.88■□□□□ 0.29
SNX1-210ENST00000560260 SLC25A6P12236 298 aa16.88■□□□□ 0.29
SNX1-210ENST00000560260 RHOGP84095 191 aa16.88■□□□□ 0.29
SNX1-210ENST00000560260 C2orf68Q2NKX9 166 aa16.88■□□□□ 0.29
SNX1-210ENST00000560260 DEFB136Q30KP8 78 aa16.88■□□□□ 0.29
SNX1-210ENST00000560260 C12orf45Q8N5I9 185 aaPredicted RBP16.88■□□□□ 0.29
SNX1-210ENST00000560260 P2RX4Q99571 388 aa16.88■□□□□ 0.29
SNX1-210ENST00000560260 PDCD10Q9BUL8 212 aa16.88■□□□□ 0.29
SNX1-210ENST00000560260 HSPB7Q9UBY9 170 aa16.88■□□□□ 0.29
SNX1-210ENST00000560260 F11RQ9Y624 299 aaKnown RBP16.88■□□□□ 0.29
SNX1-210ENST00000560260 NUDT19A8MXV4 375 aa16.87■□□□□ 0.29
SNX1-210ENST00000560260 INS-IGF2F8WCM5 200 aa16.87■□□□□ 0.29
SNX1-210ENST00000560260 I3L521 148 aa16.87■□□□□ 0.29
SNX1-210ENST00000560260 HOXA1P49639 335 aaPredicted RBP16.87■□□□□ 0.29
SNX1-210ENST00000560260 TNFRSF9Q07011 255 aa16.87■□□□□ 0.29
SNX1-210ENST00000560260 OR1S1Q8NH92 325 aa16.87■□□□□ 0.29
SNX1-210ENST00000560260 C4orf3Q8WVX3 66 aa16.87■□□□□ 0.29
SNX1-210ENST00000560260 OR10C1Q96KK4 312 aa16.87■□□□□ 0.29
SNX1-210ENST00000560260 M0QZ24 198 aa16.86■□□□□ 0.29
SNX1-210ENST00000560260 PRAF2O60831 178 aa16.86■□□□□ 0.29
SNX1-210ENST00000560260 NDUFB8O95169 186 aa16.86■□□□□ 0.29
SNX1-210ENST00000560260 UXS1Q8NBZ7 420 aa16.86■□□□□ 0.29
SNX1-210ENST00000560260 DUX3Q96PT4 197 aa16.86■□□□□ 0.29
SNX1-210ENST00000560260 LGALS1P09382 135 aaKnown RBP16.85■□□□□ 0.29
SNX1-210ENST00000560260 ZNF114Q8NC26 417 aa16.85■□□□□ 0.29
SNX1-210ENST00000560260 RAX2Q96IS3 184 aa16.85■□□□□ 0.29
SNX1-210ENST00000560260 RBKSQ9H477 322 aa16.85■□□□□ 0.29
SNX1-210ENST00000560260 GPN1Q9HCN4 374 aaPredicted RBP16.85■□□□□ 0.29
SNX1-210ENST00000560260 FBXL7Q9UJT9 491 aa16.85■□□□□ 0.29
SNX1-210ENST00000560260 FAM223BA6NKX1 122 aa16.84■□□□□ 0.29
SNX1-210ENST00000560260 CEBPZOSA8MTT3 80 aa16.84■□□□□ 0.29
SNX1-210ENST00000560260 SNRPGP15A8MWD9 76 aa16.84■□□□□ 0.29
SNX1-210ENST00000560260 DHFRP00374 187 aa16.84■□□□□ 0.29
SNX1-210ENST00000560260 IFNA21P01568 189 aa16.84■□□□□ 0.29
SNX1-210ENST00000560260 RNASE2P10153 161 aaKnown RBP16.84■□□□□ 0.29
SNX1-210ENST00000560260 DEFA4P12838 97 aa16.84■□□□□ 0.29
SNX1-210ENST00000560260 RUNX1Q01196 453 aa16.84■□□□□ 0.29
SNX1-210ENST00000560260 RGS21Q2M5E4 152 aa16.84■□□□□ 0.29
SNX1-210ENST00000560260 FAM223AQ8IWN6 122 aa16.84■□□□□ 0.29
SNX1-210ENST00000560260 NECAP1Q8NC96 275 aa16.84■□□□□ 0.29
SNX1-210ENST00000560260 OR4D5Q8NGN0 318 aa16.84■□□□□ 0.29
SNX1-210ENST00000560260 C7orf66A4D0T2 115 aa16.83■□□□□ 0.28
SNX1-210ENST00000560260 MFSD2BA6NFX1 497 aa16.83■□□□□ 0.28
SNX1-210ENST00000560260 EXOSC2Q13868 293 aaKnown RBP16.83■□□□□ 0.28
SNX1-210ENST00000560260 BSXQ3C1V8 233 aa16.83■□□□□ 0.28
SNX1-210ENST00000560260 OR1P1Q8NH06 330 aa16.83■□□□□ 0.28
SNX1-210ENST00000560260 S4R3C0 116 aa16.83■□□□□ 0.28
SNX1-210ENST00000560260 WNK1Q9H4A3 2382 aa16.83■□□□□ 0.28
SNX1-210ENST00000560260 C13orf42A0A1B0GVH6 325 aa16.82■□□□□ 0.28
SNX1-210ENST00000560260 HIST1H1BP16401 226 aaKnown RBP16.82■□□□□ 0.28
SNX1-210ENST00000560260 ERHP84090 104 aaKnown RBP16.82■□□□□ 0.28
SNX1-210ENST00000560260 OXA1LQ15070 435 aa16.82■□□□□ 0.28
SNX1-210ENST00000560260 TATDN3Q17R31 274 aa16.82■□□□□ 0.28
SNX1-210ENST00000560260 IAH1Q2TAA2 248 aaPredicted RBP16.82■□□□□ 0.28
SNX1-210ENST00000560260 C15orf32Q32M92 178 aa16.82■□□□□ 0.28
SNX1-210ENST00000560260 SLC25A24Q6NUK1 477 aa16.82■□□□□ 0.28
SNX1-210ENST00000560260 MRPL41Q8IXM3 137 aaKnown RBP16.82■□□□□ 0.28
SNX1-210ENST00000560260 ZBTB8BQ8NAP8 495 aaPredicted RBP16.82■□□□□ 0.28
SNX1-210ENST00000560260 OR4F17Q8NGA8 305 aa16.82■□□□□ 0.28
SNX1-210ENST00000560260 TMEM170AQ8WVE7 144 aa16.82■□□□□ 0.28
SNX1-210ENST00000560260 USMG5Q96IX5 58 aa16.82■□□□□ 0.28
SNX1-210ENST00000560260 OR4F4Q96R69 305 aa16.82■□□□□ 0.28
SNX1-210ENST00000560260 ENY2Q9NPA8 101 aa16.82■□□□□ 0.28
SNX1-210ENST00000560260 A0A0G2JLM5 398 aa16.81■□□□□ 0.28
SNX1-210ENST00000560260 TRBV12-3P01733 135 aa16.81■□□□□ 0.28
SNX1-210ENST00000560260 IGHV3-23P01764 117 aa16.81■□□□□ 0.28
SNX1-210ENST00000560260 ATP5G2Q06055 141 aa16.81■□□□□ 0.28
SNX1-210ENST00000560260 PRR31Q5SQ13 230 aa16.81■□□□□ 0.28
SNX1-210ENST00000560260 PVRIGQ6DKI7 326 aa16.81■□□□□ 0.28
SNX1-210ENST00000560260 ZNF343Q6P1L6 599 aa16.81■□□□□ 0.28
SNX1-210ENST00000560260 DTD1Q8TEA8 209 aa16.81■□□□□ 0.28
SNX1-210ENST00000560260 CCDC140Q96MF4 163 aa16.81■□□□□ 0.28
SNX1-210ENST00000560260 MAGT1Q9H0U3 335 aa16.81■□□□□ 0.28
SNX1-210ENST00000560260 ALG5Q9Y673 324 aa16.81■□□□□ 0.28
SNX1-210ENST00000560260 IGHV4OR15-8A0A075B7B6 117 aa16.8■□□□□ 0.28
SNX1-210ENST00000560260 A0A087WW49 117 aa16.8■□□□□ 0.28
SNX1-210ENST00000560260 IGHV3-21A0A0B4J1V1 117 aa16.8■□□□□ 0.28
SNX1-210ENST00000560260 FAM90A26D6RGX4 464 aa16.8■□□□□ 0.28
SNX1-210ENST00000560260 K7EIM0 57 aa16.8■□□□□ 0.28
SNX1-210ENST00000560260 IAPPP10997 89 aa16.8■□□□□ 0.28
SNX1-210ENST00000560260 FHL3Q13643 280 aa16.8■□□□□ 0.28
SNX1-210ENST00000560260 HEYLQ9NQ87 328 aaPredicted RBP16.8■□□□□ 0.28
SNX1-210ENST00000560260 PKD1L1Q8TDX9 2849 aa16.79■□□□□ 0.28
SNX1-210ENST00000560260 FAM25EA8MYX2 175 aa16.79■□□□□ 0.28
SNX1-210ENST00000560260 CCL24O00175 119 aa16.79■□□□□ 0.28
SNX1-210ENST00000560260 ID3Q02535 119 aa16.79■□□□□ 0.28
SNX1-210ENST00000560260 OR11H1Q8NG94 326 aa16.79■□□□□ 0.28
SNX1-210ENST00000560260 CACFD1Q9UGQ2 172 aa16.79■□□□□ 0.28
SNX1-210ENST00000560260 ANKRD34BA5PLL1 514 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms