RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 VN1R17PQ8TDU5 208 aa13.25□□□□□ -0.29
HDDC3-205ENST00000559898 BORCS5Q969J3 196 aa13.25□□□□□ -0.29
HDDC3-205ENST00000559898 LSM10Q969L4 123 aaKnown RBP13.25□□□□□ -0.29
HDDC3-205ENST00000559898 EXTL2Q9UBQ6 330 aa13.25□□□□□ -0.29
HDDC3-205ENST00000559898 SNAPC5O75971 98 aa13.24□□□□□ -0.29
HDDC3-205ENST00000559898 UCP3P55916 312 aa13.24□□□□□ -0.29
HDDC3-205ENST00000559898 SPCS2Q15005 226 aa13.24□□□□□ -0.29
HDDC3-205ENST00000559898 LHFPL1Q86WI0 220 aa13.24□□□□□ -0.29
HDDC3-205ENST00000559898 UBAC2Q8NBM4 344 aa13.24□□□□□ -0.29
HDDC3-205ENST00000559898 TMEM190Q8WZ59 177 aa13.24□□□□□ -0.29
HDDC3-205ENST00000559898 ISOC1Q96CN7 298 aa13.24□□□□□ -0.29
HDDC3-205ENST00000559898 TP53RKQ96S44 253 aa13.24□□□□□ -0.29
HDDC3-205ENST00000559898 UBQLN2Q9UHD9 624 aa13.24□□□□□ -0.29
HDDC3-205ENST00000559898 IGKV1-5P01602 117 aa13.23□□□□□ -0.29
HDDC3-205ENST00000559898 FAAP20Q6NZ36 180 aa13.23□□□□□ -0.29
HDDC3-205ENST00000559898 OR52B4Q8NGK2 314 aa13.23□□□□□ -0.29
HDDC3-205ENST00000559898 PALMDQ9NP74 551 aa13.23□□□□□ -0.29
HDDC3-205ENST00000559898 C21orf62Q9NYP8 219 aa13.23□□□□□ -0.29
HDDC3-205ENST00000559898 PRNDQ9UKY0 176 aa13.23□□□□□ -0.29
HDDC3-205ENST00000559898 I3L2K1 104 aa13.22□□□□□ -0.29
HDDC3-205ENST00000559898 CTDSP2O14595 271 aa13.22□□□□□ -0.29
HDDC3-205ENST00000559898 ZNF182P17025 639 aaPredicted RBP13.22□□□□□ -0.29
HDDC3-205ENST00000559898 ALDH3B2P48448 385 aa13.22□□□□□ -0.29
HDDC3-205ENST00000559898 PPP5CP53041 499 aa13.22□□□□□ -0.29
HDDC3-205ENST00000559898 SLC38A6Q8IZM9 456 aa13.22□□□□□ -0.29
HDDC3-205ENST00000559898 CADM3Q8N126 398 aa13.22□□□□□ -0.29
HDDC3-205ENST00000559898 OR2C3Q8N628 320 aa13.22□□□□□ -0.29
HDDC3-205ENST00000559898 THYN1Q9P016 225 aa13.22□□□□□ -0.29
HDDC3-205ENST00000559898 MRPL27Q9P0M9 148 aaKnown RBP13.22□□□□□ -0.29
HDDC3-205ENST00000559898 IGHV3-49A0A0A0MS15 119 aa13.21□□□□□ -0.29
HDDC3-205ENST00000559898 A0A0G2JRQ6 117 aa13.21□□□□□ -0.29
HDDC3-205ENST00000559898 CTSGP08311 255 aa13.21□□□□□ -0.29
HDDC3-205ENST00000559898 P0C879 139 aa13.21□□□□□ -0.29
HDDC3-205ENST00000559898 PGAM2P15259 253 aa13.21□□□□□ -0.29
HDDC3-205ENST00000559898 SP6Q3SY56 376 aa13.21□□□□□ -0.29
HDDC3-205ENST00000559898 Q56UQ5 140 aa13.21□□□□□ -0.29
HDDC3-205ENST00000559898 THOC7Q6I9Y2 204 aaKnown RBP13.21□□□□□ -0.29
HDDC3-205ENST00000559898 H2BFWTQ7Z2G1 175 aa13.21□□□□□ -0.29
HDDC3-205ENST00000559898 OR5B3Q8NH48 314 aa13.21□□□□□ -0.29
HDDC3-205ENST00000559898 MISP3Q96FF7 219 aa13.21□□□□□ -0.29
HDDC3-205ENST00000559898 BSCL2Q96G97 398 aaPredicted RBP13.21□□□□□ -0.29
HDDC3-205ENST00000559898 C20orf24Q9BUV8 137 aa13.21□□□□□ -0.29
HDDC3-205ENST00000559898 MTFP1Q9UDX5 166 aa13.21□□□□□ -0.29
HDDC3-205ENST00000559898 UFC1Q9Y3C8 167 aa13.21□□□□□ -0.29
HDDC3-205ENST00000559898 PIGPP57054 158 aa13.2□□□□□ -0.3
HDDC3-205ENST00000559898 PLECQ15149 4684 aaKnown RBP13.2□□□□□ -0.3
HDDC3-205ENST00000559898 LPCAT3Q6P1A2 487 aa13.2□□□□□ -0.3
HDDC3-205ENST00000559898 MZT2AQ6P582 158 aa13.2□□□□□ -0.3
HDDC3-205ENST00000559898 HSD17B13Q7Z5P4 300 aaPredicted RBP13.2□□□□□ -0.3
HDDC3-205ENST00000559898 OR4A16Q8NH70 328 aa13.2□□□□□ -0.3
HDDC3-205ENST00000559898 A0A0B4J293 547 aa13.19□□□□□ -0.3
HDDC3-205ENST00000559898 LCE6AA0A183 80 aa13.19□□□□□ -0.3
HDDC3-205ENST00000559898 MT-CO2P00403 227 aa13.19□□□□□ -0.3
HDDC3-205ENST00000559898 IFNA6P05013 189 aa13.19□□□□□ -0.3
HDDC3-205ENST00000559898 ELLP55199 621 aaPredicted RBP13.19□□□□□ -0.3
HDDC3-205ENST00000559898 RND3P61587 244 aa13.19□□□□□ -0.3
HDDC3-205ENST00000559898 PRCDQ00LT1 54 aa13.19□□□□□ -0.3
HDDC3-205ENST00000559898 ZNF124Q15973 351 aa13.19□□□□□ -0.3
HDDC3-205ENST00000559898 RNASE10Q5GAN6 216 aaKnown RBP13.19□□□□□ -0.3
HDDC3-205ENST00000559898 SLC16A13Q7RTY0 426 aa13.19□□□□□ -0.3
HDDC3-205ENST00000559898 OR1P1Q8NH06 330 aa13.19□□□□□ -0.3
HDDC3-205ENST00000559898 MARCH1Q8TCQ1 289 aa13.19□□□□□ -0.3
HDDC3-205ENST00000559898 TMEM56Q96MV1 263 aa13.19□□□□□ -0.3
HDDC3-205ENST00000559898 FAM212BQ9NTI7 297 aaPredicted RBP13.19□□□□□ -0.3
HDDC3-205ENST00000559898 IGHV3OR16-13A0A075B7E8 117 aa13.18□□□□□ -0.3
HDDC3-205ENST00000559898 IGHV3-74A0A0B4J1X5 117 aa13.18□□□□□ -0.3
HDDC3-205ENST00000559898 NDUFA4O00483 81 aa13.18□□□□□ -0.3
HDDC3-205ENST00000559898 HSPE1P61604 102 aaKnown RBP13.18□□□□□ -0.3
HDDC3-205ENST00000559898 ODF3L2Q3SX64 289 aa13.18□□□□□ -0.3
HDDC3-205ENST00000559898 RBPMS2Q6ZRY4 209 aaKnown RBP13.18□□□□□ -0.3
HDDC3-205ENST00000559898 OR1L6Q8NGR2 347 aa13.18□□□□□ -0.3
HDDC3-205ENST00000559898 OR13C8Q8NGS7 320 aa13.18□□□□□ -0.3
HDDC3-205ENST00000559898 MARC2Q969Z3 335 aa13.18□□□□□ -0.3
HDDC3-205ENST00000559898 TSC22D3Q99576 134 aa13.18□□□□□ -0.3
HDDC3-205ENST00000559898 OVOL2Q9BRP0 275 aa13.18□□□□□ -0.3
HDDC3-205ENST00000559898 C5orf66Q9H5L9 145 aa13.18□□□□□ -0.3
HDDC3-205ENST00000559898 DAZ1Q9NQZ3 744 aaKnown RBP13.18□□□□□ -0.3
HDDC3-205ENST00000559898 FKBP11Q9NYL4 201 aa13.18□□□□□ -0.3
HDDC3-205ENST00000559898 MRPL36Q9P0J6 103 aaKnown RBP13.18□□□□□ -0.3
HDDC3-205ENST00000559898 ALMS1Q8TCU4 4167 aa13.17□□□□□ -0.3
HDDC3-205ENST00000559898 ST8SIA3O43173 380 aa13.17□□□□□ -0.3
HDDC3-205ENST00000559898 CD74P04233 296 aa13.17□□□□□ -0.3
HDDC3-205ENST00000559898 CTSDP07339 412 aaPredicted RBP13.17□□□□□ -0.3
HDDC3-205ENST00000559898 EWSR1Q01844 656 aaKnown RBP eCLIP13.17□□□□□ -0.3
HDDC3-205ENST00000559898 SCGB2B2Q4G0G5 96 aa13.17□□□□□ -0.3
HDDC3-205ENST00000559898 Q6ZRM9 215 aa13.17□□□□□ -0.3
HDDC3-205ENST00000559898 TMEM229BQ8NBD8 167 aa13.17□□□□□ -0.3
HDDC3-205ENST00000559898 LHFPL5Q8TAF8 219 aa13.17□□□□□ -0.3
HDDC3-205ENST00000559898 PINX1Q96BK5 328 aaKnown RBP13.17□□□□□ -0.3
HDDC3-205ENST00000559898 RNF2Q99496 336 aa13.17□□□□□ -0.3
HDDC3-205ENST00000559898 GGTLC1Q9BX51 225 aa13.17□□□□□ -0.3
HDDC3-205ENST00000559898 MRPS26Q9BYN8 205 aaKnown RBP13.17□□□□□ -0.3
HDDC3-205ENST00000559898 TRAV25A0A0B4J276 109 aa13.16□□□□□ -0.3
HDDC3-205ENST00000559898 C3orf85A0A1B0GTC6 90 aa13.16□□□□□ -0.3
HDDC3-205ENST00000559898 MLANAQ16655 118 aa13.16□□□□□ -0.3
HDDC3-205ENST00000559898 SPSB3Q6PJ21 355 aa13.16□□□□□ -0.3
HDDC3-205ENST00000559898 GPR141Q7Z602 305 aa13.16□□□□□ -0.3
HDDC3-205ENST00000559898 LILRB2Q8N423 598 aa13.16□□□□□ -0.3
HDDC3-205ENST00000559898 ZNF114Q8NC26 417 aa13.16□□□□□ -0.3
HDDC3-205ENST00000559898 AP3S1Q92572 193 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms