RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 HS3ST6Q96QI5 342 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 NEU1Q99519 415 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 TMEM50AO95807 157 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 GZMHP20718 246 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 TSPAN7P41732 249 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 SOX8P57073 446 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 GNB2P62879 340 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 MOB3BQ86TA1 216 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 REPIN1Q9BWE0 567 aaKnown RBP5.98□□□□□ -1.45
USP3-210ENST00000559192 MAP1LC3AQ9H492 121 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 NGBQ9NPG2 151 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 PRNDQ9UKY0 176 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 TRAV1-1A0A0B4J248 108 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 TMPRSS2O15393 492 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 ESDP10768 282 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 IGFBP2P18065 325 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 SFTA2Q6UW10 78 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 MIR17HGQ75NE6 70 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 TMEM45BQ96B21 275 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 SIGLEC12Q96PQ1 595 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 NHP2Q9NX24 153 aaKnown RBP5.98□□□□□ -1.45
USP3-210ENST00000559192 PPIAL4EA0A075B759 164 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 IGKV1-5P01602 117 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 PPIAL4FP0DN26 164 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 GATA2P23769 480 aaPredicted RBP5.98□□□□□ -1.45
USP3-210ENST00000559192 TNFAIP6P98066 277 aaPredicted RBP5.98□□□□□ -1.45
USP3-210ENST00000559192 HOXA4Q00056 320 aaPredicted RBP5.98□□□□□ -1.45
USP3-210ENST00000559192 OCC1Q8TAD7 63 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 TMEM208Q9BTX3 173 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 NRN1Q9NPD7 142 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 TMEM160Q9NX00 188 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 SEMA5BQ9P283 1151 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 PPIAL4AQ9Y536 164 aa5.98□□□□□ -1.45
USP3-210ENST00000559192 HEATR5AQ86XA9 2040 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 CELA3BP08861 270 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 TDGF1P3P51864 188 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 ZNF726P1Q15940 193 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 TNXAQ16473 311 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 C1orf194Q5T5A4 169 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 C20orf204Q6ZNR8 217 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 Q6ZRM9 215 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 HARBI1Q96MB7 349 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 TXNDC17Q9BRA2 123 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 TCF19Q9Y242 345 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 POLR3KQ9Y2Y1 108 aaPredicted RBP5.97□□□□□ -1.45
USP3-210ENST00000559192 IGLV3-32A0A0A0MS00 114 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 IL15RAQ13261 267 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 CIRBPQ14011 172 aaKnown RBP5.97□□□□□ -1.45
USP3-210ENST00000559192 KRTCAP3Q53RY4 240 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 TIMM23BQ5SRD1 257 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 OR13A1Q8NGR1 328 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 SARAFQ96BY9 339 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 NABP2Q9BQ15 211 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 MRPS16Q9Y3D3 137 aaKnown RBP5.97□□□□□ -1.45
USP3-210ENST00000559192 hADV38S2A0JD32 116 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 TMEM189A5PLL7 270 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 HIST1H1AQ02539 215 aaPredicted RBP5.97□□□□□ -1.45
USP3-210ENST00000559192 RNFT1Q5M7Z0 435 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 SNHG12Q9BXW3 62 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 ARHGEF17Q96PE2 2063 aaPredicted RBP5.97□□□□□ -1.45
USP3-210ENST00000559192 K7ESF4 209 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 UMODP07911 640 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 DEFB109BQ30KR1 87 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 ACSF3Q4G176 576 aaPredicted RBP5.97□□□□□ -1.45
USP3-210ENST00000559192 LYPD6BQ8NI32 183 aa5.97□□□□□ -1.45
USP3-210ENST00000559192 KLF14Q8TD94 323 aaPredicted RBP5.97□□□□□ -1.45
USP3-210ENST00000559192 FOXG1P55316 489 aaPredicted RBP5.96□□□□□ -1.45
USP3-210ENST00000559192 FOXA3P55318 350 aaPredicted RBP5.96□□□□□ -1.45
USP3-210ENST00000559192 UBE2V1Q13404 147 aa5.96□□□□□ -1.45
USP3-210ENST00000559192 GAGE13Q4V321 117 aa5.96□□□□□ -1.45
USP3-210ENST00000559192 PCSK4Q6UW60 755 aa5.96□□□□□ -1.45
USP3-210ENST00000559192 UNQ5815/PRO19632Q6UWF5 114 aa5.96□□□□□ -1.45
USP3-210ENST00000559192 RBPMS2Q6ZRY4 209 aaKnown RBP5.96□□□□□ -1.45
USP3-210ENST00000559192 KLK15Q9H2R5 256 aa5.96□□□□□ -1.45
USP3-210ENST00000559192 LRRK1Q38SD2 2015 aa5.96□□□□□ -1.45
USP3-210ENST00000559192 SNRNP200O75643 2136 aaKnown RBP5.96□□□□□ -1.46
USP3-210ENST00000559192 IFNL4K9M1U5 179 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 LILRA1O75019 489 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 REG1AP05451 166 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 SELLP14151 372 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 CDKN1AP38936 164 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 RND2P52198 227 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 C19orf54Q5BKX5 351 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 SPATA31B1PQ5VZV4 182 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 ZNF497Q6ZNH5 498 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 DMRTC2Q8IXT2 367 aaPredicted RBP5.96□□□□□ -1.46
USP3-210ENST00000559192 SELENOKQ9Y6D0 94 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 DOCK9Q9BZ29 2069 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 UNC13CQ8NB66 2214 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 KBTBD11-OT1A0A1B0GTJ5 212 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 MKRN2OSH3BPM6 223 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 SPINK8P0C7L1 97 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 OR9G9P0C7N8 305 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 MC5RP33032 325 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 LINC00205P59089 165 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 LINC01551Q86U37 167 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 SAP25Q8TEE9 199 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 EDA2RQ9HAV5 297 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 A8MWV9 139 aa5.96□□□□□ -1.46
USP3-210ENST00000559192 FOXH1O75593 365 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 165 ms