RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ZNF324O75467 553 aaPredicted RBP9.38□□□□□ -0.91
LDLR-208ENST00000558518 UBE2L3P68036 154 aaKnown RBP9.38□□□□□ -0.91
LDLR-208ENST00000558518 KRTAP27-1Q3LI81 207 aa9.38□□□□□ -0.91
LDLR-208ENST00000558518 C6orf15Q6UXA7 325 aaPredicted RBP9.38□□□□□ -0.91
LDLR-208ENST00000558518 CEP192Q8TEP8 1941 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 ACACAQ13085 2346 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 SMPD2O60906 423 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 PYYP10082 97 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 SLAQ13239 276 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 SRSF7Q16629 238 aaKnown RBP eCLIP9.37□□□□□ -0.91
LDLR-208ENST00000558518 OR9G1Q8NH87 305 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 TRIB1Q96RU8 372 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 ASCL2Q99929 193 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 NABP2Q9BQ15 211 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 NAA38Q9BRA0 125 aaKnown RBP9.37□□□□□ -0.91
LDLR-208ENST00000558518 ALKBH7Q9BT30 221 aaPredicted RBP9.37□□□□□ -0.91
LDLR-208ENST00000558518 CDC42EP3Q9UKI2 254 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 TET2Q6N021 2002 aaPredicted RBP9.37□□□□□ -0.91
LDLR-208ENST00000558518 TMPRSS2O15393 492 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 SPRY3O43610 288 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 IGLC2P0DOY2 106 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 IGLC3P0DOY3 106 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 ZNF138P52744 262 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 YPEL3P61236 119 aaPredicted RBP9.37□□□□□ -0.91
LDLR-208ENST00000558518 GNG5P63218 68 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 Q8IYB0 196 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 KCNS1Q96KK3 526 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 GP6Q9HCN6 339 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 C10orf142B7Z368 130 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 APOA2P02652 100 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 COTL1Q14019 142 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 FBXW9Q5XUX1 488 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 SSX8Q7RTT4 187 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 KLHDC1Q8N7A1 406 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 ZNF738Q8NE65 137 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 C22orf15Q8WYQ4 148 aa9.37□□□□□ -0.91
LDLR-208ENST00000558518 UBE2ZQ9H832 354 aaPredicted RBP9.37□□□□□ -0.91
LDLR-208ENST00000558518 hDV102S1A0JD36 115 aa9.36□□□□□ -0.91
LDLR-208ENST00000558518 BMPR1BO00238 502 aa9.36□□□□□ -0.91
LDLR-208ENST00000558518 NDUFB8O95169 186 aa9.36□□□□□ -0.91
LDLR-208ENST00000558518 CD99P14209 185 aa9.36□□□□□ -0.91
LDLR-208ENST00000558518 OPRK1P41145 380 aa9.36□□□□□ -0.91
LDLR-208ENST00000558518 TSKUQ8WUA8 353 aa9.36□□□□□ -0.91
LDLR-208ENST00000558518 TTC28Q96AY4 2481 aa9.36□□□□□ -0.91
LDLR-208ENST00000558518 A0A1W2PRD5 423 aa9.36□□□□□ -0.91
LDLR-208ENST00000558518 A0A1W2PRF3 423 aa9.36□□□□□ -0.91
LDLR-208ENST00000558518 A0A1W2PRM7 423 aa9.36□□□□□ -0.91
LDLR-208ENST00000558518 GFRA3O60609 400 aa9.36□□□□□ -0.91
LDLR-208ENST00000558518 LINC00614P0C842 121 aa9.36□□□□□ -0.91
LDLR-208ENST00000558518 DUTP33316 252 aaKnown RBP9.36□□□□□ -0.91
LDLR-208ENST00000558518 OR10W1Q8NGF6 305 aa9.36□□□□□ -0.91
LDLR-208ENST00000558518 MBNL3Q9NUK0 354 aaKnown RBP9.36□□□□□ -0.91
LDLR-208ENST00000558518 IL19Q9UHD0 177 aa9.36□□□□□ -0.91
LDLR-208ENST00000558518 V9GYV3 84 aa9.36□□□□□ -0.91
LDLR-208ENST00000558518 MGAQ8IWI9 3026 aa9.36□□□□□ -0.91
LDLR-208ENST00000558518 LDLRAD2Q5SZI1 272 aa9.36□□□□□ -0.91
LDLR-208ENST00000558518 KIR3DL3Q8N743 410 aa9.36□□□□□ -0.91
LDLR-208ENST00000558518 Q8TCH9 128 aa9.36□□□□□ -0.91
LDLR-208ENST00000558518 TACC2O95359 2948 aa9.35□□□□□ -0.91
LDLR-208ENST00000558518 TRBV6-6A0A0A6YYG2 114 aa9.35□□□□□ -0.91
LDLR-208ENST00000558518 CORTO00230 105 aa9.35□□□□□ -0.91
LDLR-208ENST00000558518 NUDT3O95989 172 aa9.35□□□□□ -0.91
LDLR-208ENST00000558518 TSPOP30536 169 aa9.35□□□□□ -0.91
LDLR-208ENST00000558518 PRDX2P32119 198 aa9.35□□□□□ -0.91
LDLR-208ENST00000558518 UQCRFS1P47985 274 aa9.35□□□□□ -0.91
LDLR-208ENST00000558518 COMPP49747 757 aaPredicted RBP9.35□□□□□ -0.91
LDLR-208ENST00000558518 PRB3Q04118 309 aaPredicted RBP9.35□□□□□ -0.91
LDLR-208ENST00000558518 MPV17L2Q567V2 206 aa9.35□□□□□ -0.91
LDLR-208ENST00000558518 TCF24Q7RTU0 167 aa9.35□□□□□ -0.91
LDLR-208ENST00000558518 LOXL4Q96JB6 756 aa9.35□□□□□ -0.91
LDLR-208ENST00000558518 REG1AP05451 166 aa9.35□□□□□ -0.91
LDLR-208ENST00000558518 ORM2P19652 201 aa9.35□□□□□ -0.91
LDLR-208ENST00000558518 CA7P43166 264 aa9.35□□□□□ -0.91
LDLR-208ENST00000558518 ZNF134P52741 427 aa9.35□□□□□ -0.91
LDLR-208ENST00000558518 SMIM21Q3B7S5 101 aa9.35□□□□□ -0.91
LDLR-208ENST00000558518 J3QR06 171 aa9.35□□□□□ -0.91
LDLR-208ENST00000558518 YPEL1O60688 119 aa9.35□□□□□ -0.91
LDLR-208ENST00000558518 ACP7Q6ZNF0 438 aa9.35□□□□□ -0.91
LDLR-208ENST00000558518 Q8N7P7 452 aa9.35□□□□□ -0.91
LDLR-208ENST00000558518 YPEL2Q96QA6 119 aa9.35□□□□□ -0.91
LDLR-208ENST00000558518 SPTAN1Q13813 2472 aaKnown RBP9.34□□□□□ -0.91
LDLR-208ENST00000558518 PROP1O75360 226 aa9.34□□□□□ -0.91
LDLR-208ENST00000558518 WISP2O76076 250 aa9.34□□□□□ -0.91
LDLR-208ENST00000558518 TDGF1P13385 188 aa9.34□□□□□ -0.91
LDLR-208ENST00000558518 ZNF146Q15072 292 aa9.34□□□□□ -0.91
LDLR-208ENST00000558518 OR4A47Q6IF82 309 aa9.34□□□□□ -0.91
LDLR-208ENST00000558518 TMEM136Q6ZRR5 245 aa9.34□□□□□ -0.91
LDLR-208ENST00000558518 KALRNO60229 2985 aa9.34□□□□□ -0.91
LDLR-208ENST00000558518 SMG1Q96Q15 3661 aaKnown RBP9.34□□□□□ -0.91
LDLR-208ENST00000558518 AMY1AP04745 511 aa9.34□□□□□ -0.91
LDLR-208ENST00000558518 MORN5Q5VZ52 161 aa9.34□□□□□ -0.91
LDLR-208ENST00000558518 SLC35E4Q6ICL7 350 aa9.34□□□□□ -0.91
LDLR-208ENST00000558518 WDR73Q6P4I2 378 aa9.34□□□□□ -0.91
LDLR-208ENST00000558518 DUX4L9Q6RFH8 374 aaPredicted RBP9.34□□□□□ -0.91
LDLR-208ENST00000558518 MOGAT3Q86VF5 341 aa9.34□□□□□ -0.91
LDLR-208ENST00000558518 ZBTB34Q8NCN2 500 aa9.34□□□□□ -0.91
LDLR-208ENST00000558518 OR52E5Q8NH55 327 aa9.34□□□□□ -0.91
LDLR-208ENST00000558518 SLC45A2Q9UMX9 530 aa9.34□□□□□ -0.91
LDLR-208ENST00000558518 GGTLC3B5MD39 225 aa9.33□□□□□ -0.92
LDLR-208ENST00000558518 ZNF718Q3SXZ3 478 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms