RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 TOX4O94842 621 aa10.15□□□□□ -0.78
LDLR-205ENST00000557933 CXorf1O96002 111 aa10.15□□□□□ -0.78
LDLR-205ENST00000557933 REG1BP48304 166 aa10.15□□□□□ -0.78
LDLR-205ENST00000557933 RAB7AP51149 207 aa10.15□□□□□ -0.78
LDLR-205ENST00000557933 RPEL1Q2QD12 228 aa10.15□□□□□ -0.78
LDLR-205ENST00000557933 UNQ5815/PRO19632Q6UWF5 114 aa10.15□□□□□ -0.78
LDLR-205ENST00000557933 LYG1Q8N1E2 194 aa10.15□□□□□ -0.78
LDLR-205ENST00000557933 OR9G1Q8NH87 305 aa10.15□□□□□ -0.78
LDLR-205ENST00000557933 STARD4Q96DR4 205 aa10.15□□□□□ -0.78
LDLR-205ENST00000557933 PARD6GQ9BYG4 376 aaPredicted RBP10.15□□□□□ -0.78
LDLR-205ENST00000557933 TNFSF13O75888 250 aa10.15□□□□□ -0.78
LDLR-205ENST00000557933 PCP4P48539 62 aa10.15□□□□□ -0.78
LDLR-205ENST00000557933 ZNF83P51522 516 aa10.15□□□□□ -0.78
LDLR-205ENST00000557933 ERVK-16P61578 105 aa10.15□□□□□ -0.78
LDLR-205ENST00000557933 ZNF718Q3SXZ3 478 aa10.15□□□□□ -0.78
LDLR-205ENST00000557933 SLC35E4Q6ICL7 350 aa10.15□□□□□ -0.78
LDLR-205ENST00000557933 DHRS13Q6UX07 377 aa10.15□□□□□ -0.78
LDLR-205ENST00000557933 Q8IYB0 196 aa10.15□□□□□ -0.78
LDLR-205ENST00000557933 NANOS1Q8WY41 292 aaKnown RBP10.15□□□□□ -0.78
LDLR-205ENST00000557933 S1PR3Q99500 378 aa10.15□□□□□ -0.78
LDLR-205ENST00000557933 TRGV5A0A0B4J1U4 118 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 A0A1B0GWJ7 208 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 IGKV1-16P04430 117 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 SP1P08047 785 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 CHRNB4P30926 498 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 PRDX2P32119 198 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 RELBQ01201 579 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 MSMPQ1L6U9 139 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 Q56UQ5 140 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 ASCL2Q99929 193 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 PLEKHA3Q9HB20 300 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 DCAF16Q9NXF7 216 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 CLCF1Q9UBD9 225 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 V9GYV3 84 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 AKAP6Q13023 2319 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 ZFHX2Q9C0A1 2572 aaPredicted RBP10.14□□□□□ -0.79
LDLR-205ENST00000557933 HELTA6NFD8 242 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 SPRY3O43610 288 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 TCTAP57738 103 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 SSBP2P81877 361 aaPredicted RBP10.14□□□□□ -0.79
LDLR-205ENST00000557933 MRPL49Q13405 166 aaKnown RBP10.14□□□□□ -0.79
LDLR-205ENST00000557933 TRIP6Q15654 476 aaKnown RBP10.14□□□□□ -0.79
LDLR-205ENST00000557933 VWC2Q2TAL6 325 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 ZC2HC1AQ96GY0 325 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 OPN3Q9H1Y3 402 aaPredicted RBP10.14□□□□□ -0.79
LDLR-205ENST00000557933 ZNF355PQ9NSJ1 428 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 CEP295Q9C0D2 2601 aa10.14□□□□□ -0.79
LDLR-205ENST00000557933 IGKV1D-17A0A075B6S4 117 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 IGHV3-21A0A0B4J1V1 117 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 GGTLC3B5MD39 225 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 PYYP10082 97 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 NPY1RP25929 384 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 YPEL3P61236 119 aaPredicted RBP10.13□□□□□ -0.79
LDLR-205ENST00000557933 SLAQ13239 276 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 TEPPQ6URK8 271 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 TEX43Q6ZNM6 134 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 APC2O95996 2303 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 A0A1W2PS18 150 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 MMP23AO75900 390 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 GPX1P07203 203 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 CECR9P0C854 216 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 C3orf79P0CE67 100 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 OPRK1P41145 380 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 VDAC2P45880 294 aaPredicted RBP10.13□□□□□ -0.79
LDLR-205ENST00000557933 MORN2Q502X0 79 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 MOGAT3Q86VF5 341 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 KIR3DL3Q8N743 410 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 SLC24A4Q8NFF2 622 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 C15orf65H3BRN8 121 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 TM4SF5O14894 197 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 OR4A47Q6IF82 309 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 C19orf35Q6ZS72 473 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 ZCCHC24Q8N2G6 241 aaKnown RBP10.13□□□□□ -0.79
LDLR-205ENST00000557933 GMPPAQ96IJ6 420 aaPredicted RBP10.13□□□□□ -0.79
LDLR-205ENST00000557933 ZNF586Q9NXT0 402 aa10.13□□□□□ -0.79
LDLR-205ENST00000557933 SPTBN1Q01082 2364 aaKnown RBP10.12□□□□□ -0.79
LDLR-205ENST00000557933 LOC102724200A0A096LPH7 203 aaPredicted RBP10.12□□□□□ -0.79
LDLR-205ENST00000557933 C21orf140B9A014 251 aa10.12□□□□□ -0.79
LDLR-205ENST00000557933 HOXC12P31275 282 aa10.12□□□□□ -0.79
LDLR-205ENST00000557933 FOXA3P55318 350 aaPredicted RBP10.12□□□□□ -0.79
LDLR-205ENST00000557933 RPL8P62917 257 aaKnown RBP10.12□□□□□ -0.79
LDLR-205ENST00000557933 Q8N976 141 aa10.12□□□□□ -0.79
LDLR-205ENST00000557933 NPVFQ9HCQ7 196 aa10.12□□□□□ -0.79
LDLR-205ENST00000557933 CLEC5AQ9NY25 188 aa10.12□□□□□ -0.79
LDLR-205ENST00000557933 SAA2-SAA4A0A096LPE2 208 aa10.12□□□□□ -0.79
LDLR-205ENST00000557933 A8MXE2 369 aa10.12□□□□□ -0.79
LDLR-205ENST00000557933 CORTO00230 105 aa10.12□□□□□ -0.79
LDLR-205ENST00000557933 BMPR1BO00238 502 aa10.12□□□□□ -0.79
LDLR-205ENST00000557933 SAA2P0DJI9 122 aaPredicted RBP10.12□□□□□ -0.79
LDLR-205ENST00000557933 GNG5P63218 68 aa10.12□□□□□ -0.79
LDLR-205ENST00000557933 MRPS11P82912 194 aaKnown RBP10.12□□□□□ -0.79
LDLR-205ENST00000557933 C10orf55Q5SWW7 151 aa10.12□□□□□ -0.79
LDLR-205ENST00000557933 TRAT1Q6PIZ9 186 aa10.12□□□□□ -0.79
LDLR-205ENST00000557933 OR2T6Q8NHC8 308 aa10.12□□□□□ -0.79
LDLR-205ENST00000557933 ZNF503Q96F45 646 aa10.12□□□□□ -0.79
LDLR-205ENST00000557933 NABP2Q9BQ15 211 aa10.12□□□□□ -0.79
LDLR-205ENST00000557933 IFI27L2Q9H2X8 130 aa10.12□□□□□ -0.79
LDLR-205ENST00000557933 RNF24Q9Y225 148 aa10.12□□□□□ -0.79
LDLR-205ENST00000557933 PRSS46E5RG02 174 aa10.11□□□□□ -0.79
LDLR-205ENST00000557933 OR5G3P0C626 314 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms