RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 EXOSC2Q13868 293 aaKnown RBP11.08□□□□□ -0.64
USP3-205ENST00000557884 C15orf32Q32M92 178 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 C4orf46Q504U0 113 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 HSD17B13Q7Z5P4 300 aaPredicted RBP11.08□□□□□ -0.64
USP3-205ENST00000557884 ZNF429Q86V71 674 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 FAM223AQ8IWN6 122 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 NECAP1Q8NC96 275 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 USMG5Q96IX5 58 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 PDCD10Q9BUL8 212 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 PLEKHA3Q9HB20 300 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.08□□□□□ -0.64
USP3-205ENST00000557884 NUDT15Q9NV35 164 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 SHPKQ9UHJ6 478 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 DMRT1Q9Y5R6 373 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 S4R3C0 116 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 MEGF8Q7Z7M0 2845 aa11.08□□□□□ -0.64
USP3-205ENST00000557884 DNAH3Q8TD57 4116 aa11.07□□□□□ -0.64
USP3-205ENST00000557884 IGLV11-55A0A075B6I3 123 aa11.07□□□□□ -0.64
USP3-205ENST00000557884 LINC01619G3V211 115 aa11.07□□□□□ -0.64
USP3-205ENST00000557884 TRBV12-3P01733 135 aa11.07□□□□□ -0.64
USP3-205ENST00000557884 IGHV3-23P01764 117 aa11.07□□□□□ -0.64
USP3-205ENST00000557884 SULT1A3P0DMM9 295 aa11.07□□□□□ -0.64
USP3-205ENST00000557884 SULT1A4P0DMN0 295 aa11.07□□□□□ -0.64
USP3-205ENST00000557884 HOXA1P49639 335 aaPredicted RBP11.07□□□□□ -0.64
USP3-205ENST00000557884 SLURP1P55000 103 aa11.07□□□□□ -0.64
USP3-205ENST00000557884 ZNF616Q08AN1 781 aa11.07□□□□□ -0.64
USP3-205ENST00000557884 FHL3Q13643 280 aa11.07□□□□□ -0.64
USP3-205ENST00000557884 NMSQ5H8A3 153 aa11.07□□□□□ -0.64
USP3-205ENST00000557884 SLC25A24Q6NUK1 477 aa11.07□□□□□ -0.64
USP3-205ENST00000557884 LYG2Q86SG7 212 aa11.07□□□□□ -0.64
USP3-205ENST00000557884 OR52B4Q8NGK2 314 aa11.07□□□□□ -0.64
USP3-205ENST00000557884 F11RQ9Y624 299 aaKnown RBP11.07□□□□□ -0.64
USP3-205ENST00000557884 NOTCH1P46531 2555 aa11.06□□□□□ -0.64
USP3-205ENST00000557884 HSPB1P04792 205 aaKnown RBP11.06□□□□□ -0.64
USP3-205ENST00000557884 HOXB5P09067 269 aa11.06□□□□□ -0.64
USP3-205ENST00000557884 IGLL1P15814 213 aa11.06□□□□□ -0.64
USP3-205ENST00000557884 HIST1H1BP16401 226 aaKnown RBP11.06□□□□□ -0.64
USP3-205ENST00000557884 MFAP2P55001 183 aa11.06□□□□□ -0.64
USP3-205ENST00000557884 ZNF343Q6P1L6 599 aa11.06□□□□□ -0.64
USP3-205ENST00000557884 C1QL4Q86Z23 238 aa11.06□□□□□ -0.64
USP3-205ENST00000557884 OR2C3Q8N628 320 aa11.06□□□□□ -0.64
USP3-205ENST00000557884 ENKURQ8TC29 256 aa11.06□□□□□ -0.64
USP3-205ENST00000557884 ENY2Q9NPA8 101 aa11.06□□□□□ -0.64
USP3-205ENST00000557884 IGHV3-21A0A0B4J1V1 117 aa11.05□□□□□ -0.64
USP3-205ENST00000557884 MFSD2BA6NFX1 497 aa11.05□□□□□ -0.64
USP3-205ENST00000557884 G3V4G9 280 aa11.05□□□□□ -0.64
USP3-205ENST00000557884 CYB5BO43169 146 aa11.05□□□□□ -0.64
USP3-205ENST00000557884 H2AFB2P0C5Z0 115 aa11.05□□□□□ -0.64
USP3-205ENST00000557884 OR8U8P0C7N1 319 aa11.05□□□□□ -0.64
USP3-205ENST00000557884 SPCS3P61009 180 aa11.05□□□□□ -0.64
USP3-205ENST00000557884 ERHP84090 104 aaKnown RBP11.05□□□□□ -0.64
USP3-205ENST00000557884 SMCO1Q147U7 214 aa11.05□□□□□ -0.64
USP3-205ENST00000557884 OXLD1Q5BKU9 147 aa11.05□□□□□ -0.64
USP3-205ENST00000557884 LRTM2Q8N967 370 aa11.05□□□□□ -0.64
USP3-205ENST00000557884 WFDC9Q8NEX5 89 aa11.05□□□□□ -0.64
USP3-205ENST00000557884 COQ8AQ8NI60 647 aa11.05□□□□□ -0.64
USP3-205ENST00000557884 PEF1Q9UBV8 284 aaKnown RBP11.05□□□□□ -0.64
USP3-205ENST00000557884 DUXBA0A1W2PPF3 345 aa11.04□□□□□ -0.64
USP3-205ENST00000557884 CEBPZOSA8MTT3 80 aa11.04□□□□□ -0.64
USP3-205ENST00000557884 HOXD3P31249 432 aaPredicted RBP11.04□□□□□ -0.64
USP3-205ENST00000557884 KLK9Q2XQG4 91 aa11.04□□□□□ -0.64
USP3-205ENST00000557884 AARDQ4LEZ3 155 aa11.04□□□□□ -0.64
USP3-205ENST00000557884 GGNBP1Q5YKI7 109 aa11.04□□□□□ -0.64
USP3-205ENST00000557884 C11orf87Q6NUJ2 197 aa11.04□□□□□ -0.64
USP3-205ENST00000557884 OR1S1Q8NH92 325 aa11.04□□□□□ -0.64
USP3-205ENST00000557884 DCUN1D4Q92564 292 aa11.04□□□□□ -0.64
USP3-205ENST00000557884 SEC22CQ9BRL7 303 aa11.04□□□□□ -0.64
USP3-205ENST00000557884 RANGRFQ9HD47 186 aaPredicted RBP11.04□□□□□ -0.64
USP3-205ENST00000557884 KLK9Q9UKQ9 250 aa11.04□□□□□ -0.64
USP3-205ENST00000557884 NOTCH3Q9UM47 2321 aa11.03□□□□□ -0.64
USP3-205ENST00000557884 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.03□□□□□ -0.64
USP3-205ENST00000557884 PIGBOS1A0A0B4J2F0 54 aa11.03□□□□□ -0.64
USP3-205ENST00000557884 A0A1B0GU03 582 aa11.03□□□□□ -0.64
USP3-205ENST00000557884 PPP5D1E7EU14 171 aa11.03□□□□□ -0.64
USP3-205ENST00000557884 ADAP1O75689 374 aa11.03□□□□□ -0.64
USP3-205ENST00000557884 DUS4LO95620 317 aaKnown RBP11.03□□□□□ -0.64
USP3-205ENST00000557884 SNCAP37840 140 aa11.03□□□□□ -0.64
USP3-205ENST00000557884 DEFA1P59665 94 aa11.03□□□□□ -0.64
USP3-205ENST00000557884 DEFA3P59666 94 aa11.03□□□□□ -0.64
USP3-205ENST00000557884 CLEC19AQ6UXS0 136 aa11.03□□□□□ -0.64
USP3-205ENST00000557884 NRARPQ7Z6K4 114 aa11.03□□□□□ -0.64
USP3-205ENST00000557884 OR1P1Q8NH06 330 aa11.03□□□□□ -0.64
USP3-205ENST00000557884 OR52E5Q8NH55 327 aa11.03□□□□□ -0.64
USP3-205ENST00000557884 DLX4Q92988 240 aaPredicted RBP11.03□□□□□ -0.64
USP3-205ENST00000557884 EEF1AKMT3Q96AZ1 226 aa11.03□□□□□ -0.64
USP3-205ENST00000557884 MISP3Q96FF7 219 aa11.03□□□□□ -0.64
USP3-205ENST00000557884 CCDC140Q96MF4 163 aa11.03□□□□□ -0.64
USP3-205ENST00000557884 HEYLQ9NQ87 328 aaPredicted RBP11.03□□□□□ -0.64
USP3-205ENST00000557884 THYN1Q9P016 225 aa11.03□□□□□ -0.64
USP3-205ENST00000557884 TMED3Q9Y3Q3 217 aa11.03□□□□□ -0.64
USP3-205ENST00000557884 BMPR1BO00238 502 aa11.02□□□□□ -0.65
USP3-205ENST00000557884 TNFRSF9Q07011 255 aa11.02□□□□□ -0.65
USP3-205ENST00000557884 ZNF114Q8NC26 417 aa11.02□□□□□ -0.65
USP3-205ENST00000557884 OR1L6Q8NGR2 347 aa11.02□□□□□ -0.65
USP3-205ENST00000557884 RCC1LQ96I51 464 aaKnown RBP11.02□□□□□ -0.65
USP3-205ENST00000557884 RBKSQ9H477 322 aa11.02□□□□□ -0.65
USP3-205ENST00000557884 ZC4H2Q9NQZ6 224 aa11.02□□□□□ -0.65
USP3-205ENST00000557884 MPTX1A8MV57 137 aa11.01□□□□□ -0.65
USP3-205ENST00000557884 INS-IGF2F8WCM5 200 aa11.01□□□□□ -0.65
USP3-205ENST00000557884 K7EIM0 57 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms