RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 H7C2Y5 167 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 GPR31O00270 319 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 BET1O15155 118 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 PPYP01298 95 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 IGKV1-16P04430 117 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 EDN2P20800 178 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 NKX2-5P52952 324 aaPredicted RBP6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 PIGPP57054 158 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 EIF5AP63241 154 aaKnown RBP6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 HMGN3Q15651 99 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 LY6G6FQ5SQ64 297 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 AADACL3Q5VUY0 350 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 ZNF343Q6P1L6 599 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 ZNF880Q6PDB4 577 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 ZBTB34Q8NCN2 500 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 BVESQ8NE79 360 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 OR5AN1Q8NGI8 311 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 OR52B4Q8NGK2 314 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 MAFIPQ8WZ33 124 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 GALMQ96C23 342 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 GALNT14Q96FL9 552 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 ABHD14BQ96IU4 210 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 HDHD3Q9BSH5 251 aaPredicted RBP6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 NAA60Q9H7X0 242 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 PEF1Q9UBV8 284 aaKnown RBP6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 OR2W1Q9Y3N9 320 aa6.15□□□□□ -1.42
CCDC88C-214ENST00000557507 A0A0G2JLM5 398 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 KANTRA0A1W2PQU2 76 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 NUPR2A6NF83 97 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 CRYM-AS1A6NIL9 109 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 OR11H12B2RN74 326 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 RAB29O14966 203 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 SPDEFO95238 335 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 CNIH1O95406 144 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 SLC25A4P12235 298 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 RPA2P15927 270 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 PSMB6P28072 239 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 LINC00205P59089 165 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 FXYD4P59646 89 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 RND3P61587 244 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 OR2F1Q13607 317 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 FXYD3Q14802 87 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 MSMO1Q15800 293 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 RPEL1Q2QD12 228 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 THOC7Q6I9Y2 204 aaKnown RBP6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 ZNF546Q86UE3 836 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 C9orf62Q8N4C0 152 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 ADAD2Q8NCV1 583 aaKnown RBP6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 OR2K2Q8NGT1 345 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 IL1F10Q8WWZ1 152 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 C2orf50Q96LR7 162 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 OVOL2Q9BRP0 275 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 RTBDNQ9BSG5 229 aaPredicted RBP6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 CABLES2Q9BTV7 478 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 SLC5A7Q9GZV3 580 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 SLC2A9Q9NRM0 540 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 PIPOXQ9P0Z9 390 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 TMED3Q9Y3Q3 217 aa6.14□□□□□ -1.43
CCDC88C-214ENST00000557507 FXYD6-FXYD2A0A087WZ82 144 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 TRBV6-7A0A0A0MS04 114 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 A0A0J9YWU9 116 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 C3orf85A0A1B0GTC6 90 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 BMPR1BO00238 502 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 MPPED1O15442 326 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 TSC22D2O75157 780 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 PROP1O75360 226 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 SERPINE2P07093 398 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 APELAP0DMC3 54 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 PVALBP20472 110 aaPredicted RBP6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 AADACP22760 399 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 S100A11P31949 105 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 MC5RP33032 325 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 PJVKQ0ZLH3 352 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 CATR1Q13166 79 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 ZNF345Q14585 488 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 EIF5AL1Q6IS14 154 aaKnown RBP6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 LRTM2Q8N967 370 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 ZNF383Q8NA42 475 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 GATAD1Q8WUU5 269 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 SECTM1Q8WVN6 248 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 EDARADDQ8WWZ3 215 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 IL22RA2Q969J5 263 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 RNF5Q99942 180 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 AGMATQ9BSE5 352 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 MFFQ9GZY8 342 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 FXYD6Q9H0Q3 95 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 ZC4H2Q9NQZ6 224 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 CACFD1Q9UGQ2 172 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 SELENOKQ9Y6D0 94 aa6.13□□□□□ -1.43
CCDC88C-214ENST00000557507 DBX1A6NMT0 343 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 SMLR1H3BR10 107 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 ARPC5O15511 151 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 TUSC2O75896 110 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 CDS2O95674 445 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 IGLV2-23P01705 113 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 SCTP09683 121 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 S100A1P23297 94 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 AP2S1P53680 142 aaPredicted RBP6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 H2BFSP57053 126 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 RPS16P62249 146 aaKnown RBP6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms