RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 IGHV2OR16-5A0A0B4J2B6 119 aa13.37□□□□□ -0.27
SHMT2-232ENST00000557487 A0A1W2PNU3 283 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-232ENST00000557487 ZNF253O75346 499 aa13.37□□□□□ -0.27
SHMT2-232ENST00000557487 IGFBP2P18065 325 aa13.37□□□□□ -0.27
SHMT2-232ENST00000557487 CDKN1AP38936 164 aa13.37□□□□□ -0.27
SHMT2-232ENST00000557487 ZNF134P52741 427 aa13.37□□□□□ -0.27
SHMT2-232ENST00000557487 C19orf35Q6ZS72 473 aa13.37□□□□□ -0.27
SHMT2-232ENST00000557487 MIR17HGQ75NE6 70 aa13.37□□□□□ -0.27
SHMT2-232ENST00000557487 MRPL32Q9BYC8 188 aaKnown RBP13.37□□□□□ -0.27
SHMT2-232ENST00000557487 PLEKHA3Q9HB20 300 aa13.37□□□□□ -0.27
SHMT2-232ENST00000557487 IDI2-AS1Q9NZ38 188 aa13.37□□□□□ -0.27
SHMT2-232ENST00000557487 IL17BQ9UHF5 180 aa13.37□□□□□ -0.27
SHMT2-232ENST00000557487 DIDO1Q9BTC0 2240 aaKnown RBP13.37□□□□□ -0.27
SHMT2-232ENST00000557487 SMIM27A0A1W2PRY6 76 aa13.37□□□□□ -0.27
SHMT2-232ENST00000557487 DIRC3C9JPN6 131 aa13.37□□□□□ -0.27
SHMT2-232ENST00000557487 SUMO1P63165 101 aaKnown RBP13.37□□□□□ -0.27
SHMT2-232ENST00000557487 PRCDQ00LT1 54 aa13.37□□□□□ -0.27
SHMT2-232ENST00000557487 TRIB1Q96RU8 372 aa13.37□□□□□ -0.27
SHMT2-232ENST00000557487 DKK4Q9UBT3 224 aa13.37□□□□□ -0.27
SHMT2-232ENST00000557487 FBXL7Q9UJT9 491 aa13.37□□□□□ -0.27
SHMT2-232ENST00000557487 OR51B2Q9Y5P1 312 aa13.37□□□□□ -0.27
SHMT2-232ENST00000557487 SPTBN2O15020 2390 aa13.36□□□□□ -0.27
SHMT2-232ENST00000557487 AGFG2O95081 481 aa13.36□□□□□ -0.27
SHMT2-232ENST00000557487 CRYBB3P26998 211 aa13.36□□□□□ -0.27
SHMT2-232ENST00000557487 PPOXP50336 477 aa13.36□□□□□ -0.27
SHMT2-232ENST00000557487 RELQ04864 619 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-232ENST00000557487 C2orf83Q53S99 150 aa13.36□□□□□ -0.27
SHMT2-232ENST00000557487 WIPF2Q8TF74 440 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-232ENST00000557487 LPAR2Q9HBW0 351 aa13.36□□□□□ -0.27
SHMT2-232ENST00000557487 MRPL27Q9P0M9 148 aaKnown RBP13.36□□□□□ -0.27
SHMT2-232ENST00000557487 UQCR10Q9UDW1 63 aa13.36□□□□□ -0.27
SHMT2-232ENST00000557487 TBL2Q9Y4P3 447 aaKnown RBP13.36□□□□□ -0.27
SHMT2-232ENST00000557487 DOCK7Q96N67 2140 aa13.36□□□□□ -0.27
SHMT2-232ENST00000557487 HCFC1P51610 2035 aa13.35□□□□□ -0.27
SHMT2-232ENST00000557487 CTRLP40313 264 aa13.35□□□□□ -0.27
SHMT2-232ENST00000557487 KIR2DL2P43627 348 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-232ENST00000557487 AMTP48728 403 aa13.35□□□□□ -0.27
SHMT2-232ENST00000557487 TDRG1Q3Y452 100 aa13.35□□□□□ -0.27
SHMT2-232ENST00000557487 IGF2-ASQ6U949 168 aa13.35□□□□□ -0.27
SHMT2-232ENST00000557487 KLHDC1Q8N7A1 406 aa13.35□□□□□ -0.27
SHMT2-232ENST00000557487 Q8N976 141 aa13.35□□□□□ -0.27
SHMT2-232ENST00000557487 CNEP1R1Q8N9A8 125 aa13.35□□□□□ -0.27
SHMT2-232ENST00000557487 OR2Z1Q8NG97 314 aa13.35□□□□□ -0.27
SHMT2-232ENST00000557487 NRN1Q9NPD7 142 aa13.35□□□□□ -0.27
SHMT2-232ENST00000557487 KBTBD11-OT1A0A1B0GTJ5 212 aa13.35□□□□□ -0.27
SHMT2-232ENST00000557487 IZUMO1RA6ND01 250 aa13.35□□□□□ -0.27
SHMT2-232ENST00000557487 ZNF324O75467 553 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-232ENST00000557487 CD33P20138 364 aa13.35□□□□□ -0.27
SHMT2-232ENST00000557487 KRTDAPP60985 99 aa13.35□□□□□ -0.27
SHMT2-232ENST00000557487 MRPS11P82912 194 aaKnown RBP13.35□□□□□ -0.27
SHMT2-232ENST00000557487 HOXA4Q00056 320 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-232ENST00000557487 OR5I1Q13606 314 aa13.35□□□□□ -0.27
SHMT2-232ENST00000557487 OR1L8Q8NGR8 309 aa13.35□□□□□ -0.27
SHMT2-232ENST00000557487 PLSCR4Q9NRQ2 329 aa13.35□□□□□ -0.27
SHMT2-232ENST00000557487 NCOR2Q9Y618 2525 aa13.34□□□□□ -0.27
SHMT2-232ENST00000557487 A0A1W2PS18 150 aa13.34□□□□□ -0.27
SHMT2-232ENST00000557487 TMEM8BA6NDV4 472 aa13.34□□□□□ -0.27
SHMT2-232ENST00000557487 J3QR06 171 aa13.34□□□□□ -0.27
SHMT2-232ENST00000557487 UPK2O00526 184 aa13.34□□□□□ -0.27
SHMT2-232ENST00000557487 SAA2P0DJI9 122 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-232ENST00000557487 C8orf88P0DMB2 117 aa13.34□□□□□ -0.27
SHMT2-232ENST00000557487 PRRX1P54821 245 aa13.34□□□□□ -0.27
SHMT2-232ENST00000557487 C17orf58Q2M2W7 97 aa13.34□□□□□ -0.27
SHMT2-232ENST00000557487 CT45A1Q5HYN5 189 aa13.34□□□□□ -0.27
SHMT2-232ENST00000557487 IBA57Q5T440 356 aaKnown RBP13.34□□□□□ -0.27
SHMT2-232ENST00000557487 OR5B3Q8NH48 314 aa13.34□□□□□ -0.27
SHMT2-232ENST00000557487 CT45A3Q8NHU0 189 aa13.34□□□□□ -0.27
SHMT2-232ENST00000557487 IGF2BP2-AS1Q96M15 143 aa13.34□□□□□ -0.27
SHMT2-232ENST00000557487 CHRDL1Q9BU40 450 aa13.34□□□□□ -0.27
SHMT2-232ENST00000557487 SPEGQ15772 3267 aa13.34□□□□□ -0.27
SHMT2-232ENST00000557487 CACNA1DQ01668 2161 aa13.33□□□□□ -0.28
SHMT2-232ENST00000557487 IGHV1-18A0A0C4DH31 117 aa13.33□□□□□ -0.28
SHMT2-232ENST00000557487 LHBP01229 141 aa13.33□□□□□ -0.28
SHMT2-232ENST00000557487 FAM231DQ6ZW35 169 aa13.33□□□□□ -0.28
SHMT2-232ENST00000557487 CACNG8Q8WXS5 425 aa13.33□□□□□ -0.28
SHMT2-232ENST00000557487 LINC00574Q9H8X3 128 aa13.33□□□□□ -0.28
SHMT2-232ENST00000557487 DCAF16Q9NXF7 216 aa13.33□□□□□ -0.28
SHMT2-232ENST00000557487 CDC42EP3Q9UKI2 254 aa13.33□□□□□ -0.28
SHMT2-232ENST00000557487 FZR1Q9UM11 496 aa13.33□□□□□ -0.28
SHMT2-232ENST00000557487 ZFP30Q9Y2G7 519 aa13.33□□□□□ -0.28
SHMT2-232ENST00000557487 F2Z2F3 143 aa13.33□□□□□ -0.28
SHMT2-232ENST00000557487 OR7C2O60412 319 aa13.33□□□□□ -0.28
SHMT2-232ENST00000557487 ACTL6BO94805 426 aa13.33□□□□□ -0.28
SHMT2-232ENST00000557487 DOLPP1Q86YN1 238 aa13.33□□□□□ -0.28
SHMT2-232ENST00000557487 SARAFQ96BY9 339 aa13.33□□□□□ -0.28
SHMT2-232ENST00000557487 PLPPR2Q96GM1 343 aa13.33□□□□□ -0.28
SHMT2-232ENST00000557487 ZNF331Q9NQX6 463 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-232ENST00000557487 C20orf202A1L168 122 aa13.32□□□□□ -0.28
SHMT2-232ENST00000557487 BMPR1BO00238 502 aa13.32□□□□□ -0.28
SHMT2-232ENST00000557487 IGLV2-8P01709 118 aa13.32□□□□□ -0.28
SHMT2-232ENST00000557487 APCSP02743 223 aa13.32□□□□□ -0.28
SHMT2-232ENST00000557487 SFTPCP11686 197 aa13.32□□□□□ -0.28
SHMT2-232ENST00000557487 PMCHL1Q16048 86 aa13.32□□□□□ -0.28
SHMT2-232ENST00000557487 SPATA45Q537H7 98 aa13.32□□□□□ -0.28
SHMT2-232ENST00000557487 ZNF439Q8NDP4 499 aa13.32□□□□□ -0.28
SHMT2-232ENST00000557487 FAM222BQ8WU58 562 aa13.32□□□□□ -0.28
SHMT2-232ENST00000557487 STARD4Q96DR4 205 aa13.32□□□□□ -0.28
SHMT2-232ENST00000557487 ZNF503Q96F45 646 aa13.32□□□□□ -0.28
SHMT2-232ENST00000557487 RBM14Q96PK6 669 aaKnown RBP13.32□□□□□ -0.28
SHMT2-232ENST00000557487 SLC25A33Q9BSK2 321 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms