RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	IGHV1-18	A0A0C4DH31	117 aa		13.33	□□□□□ -0.28
SHMT2-231	ENST00000557433	LHB	P01229	141 aa		13.33	□□□□□ -0.28
SHMT2-231	ENST00000557433	FAM231D	Q6ZW35	169 aa		13.33	□□□□□ -0.28
SHMT2-231	ENST00000557433	TMPRSS7	Q7RTY8	843 aa		13.33	□□□□□ -0.28
SHMT2-231	ENST00000557433	CACNG8	Q8WXS5	425 aa		13.33	□□□□□ -0.28
SHMT2-231	ENST00000557433	LINC00574	Q9H8X3	128 aa		13.33	□□□□□ -0.28
SHMT2-231	ENST00000557433	DCAF16	Q9NXF7	216 aa		13.33	□□□□□ -0.28
SHMT2-231	ENST00000557433	CDC42EP3	Q9UKI2	254 aa		13.33	□□□□□ -0.28
SHMT2-231	ENST00000557433	FZR1	Q9UM11	496 aa		13.33	□□□□□ -0.28
SHMT2-231	ENST00000557433	ZFP30	Q9Y2G7	519 aa		13.33	□□□□□ -0.28
SHMT2-231	ENST00000557433	TRIOBP	Q9H2D6	2365 aa		13.33	□□□□□ -0.28
SHMT2-231	ENST00000557433		F2Z2F3	143 aa		13.33	□□□□□ -0.28
SHMT2-231	ENST00000557433	OR7C2	O60412	319 aa		13.33	□□□□□ -0.28
SHMT2-231	ENST00000557433	ACTL6B	O94805	426 aa		13.33	□□□□□ -0.28
SHMT2-231	ENST00000557433	DOLPP1	Q86YN1	238 aa		13.33	□□□□□ -0.28
SHMT2-231	ENST00000557433	SARAF	Q96BY9	339 aa		13.33	□□□□□ -0.28
SHMT2-231	ENST00000557433	PLPPR2	Q96GM1	343 aa		13.33	□□□□□ -0.28
SHMT2-231	ENST00000557433	ZNF331	Q9NQX6	463 aa	Predicted RBP	13.33	□□□□□ -0.28
SHMT2-231	ENST00000557433	C20orf202	A1L168	122 aa		13.32	□□□□□ -0.28
SHMT2-231	ENST00000557433	BMPR1B	O00238	502 aa		13.32	□□□□□ -0.28
SHMT2-231	ENST00000557433	IGLV2-8	P01709	118 aa		13.32	□□□□□ -0.28
SHMT2-231	ENST00000557433	APCS	P02743	223 aa		13.32	□□□□□ -0.28
SHMT2-231	ENST00000557433	SFTPC	P11686	197 aa		13.32	□□□□□ -0.28
SHMT2-231	ENST00000557433	PMCHL1	Q16048	86 aa		13.32	□□□□□ -0.28
SHMT2-231	ENST00000557433	SPATA45	Q537H7	98 aa		13.32	□□□□□ -0.28
SHMT2-231	ENST00000557433	ZNF439	Q8NDP4	499 aa		13.32	□□□□□ -0.28
SHMT2-231	ENST00000557433	FAM222B	Q8WU58	562 aa		13.32	□□□□□ -0.28
SHMT2-231	ENST00000557433	STARD4	Q96DR4	205 aa		13.32	□□□□□ -0.28
SHMT2-231	ENST00000557433	ZNF503	Q96F45	646 aa		13.32	□□□□□ -0.28
SHMT2-231	ENST00000557433	RBM14	Q96PK6	669 aa	Known RBP	13.32	□□□□□ -0.28
SHMT2-231	ENST00000557433	SLC25A33	Q9BSK2	321 aa		13.32	□□□□□ -0.28
SHMT2-231	ENST00000557433	RNASE7	Q9H1E1	156 aa	Known RBP	13.32	□□□□□ -0.28
SHMT2-231	ENST00000557433	SLC35D1	Q9NTN3	355 aa		13.32	□□□□□ -0.28
SHMT2-231	ENST00000557433	BET1L	Q9NYM9	111 aa		13.32	□□□□□ -0.28
SHMT2-231	ENST00000557433	CBY1	Q9Y3M2	126 aa		13.32	□□□□□ -0.28
SHMT2-231	ENST00000557433	GGTLC3	B5MD39	225 aa		13.31	□□□□□ -0.28
SHMT2-231	ENST00000557433	INS-IGF2	F8WCM5	200 aa		13.31	□□□□□ -0.28
SHMT2-231	ENST00000557433	TM4SF5	O14894	197 aa		13.31	□□□□□ -0.28
SHMT2-231	ENST00000557433	IGHV3-13	P01766	116 aa		13.31	□□□□□ -0.28
SHMT2-231	ENST00000557433	ZNF83	P51522	516 aa		13.31	□□□□□ -0.28
SHMT2-231	ENST00000557433	ZNF714	Q96N38	554 aa		13.31	□□□□□ -0.28
SHMT2-231	ENST00000557433	FAM103A1	Q9BTL3	118 aa	Known RBP	13.31	□□□□□ -0.28
SHMT2-231	ENST00000557433	WDR87	Q6ZQQ6	2873 aa		13.31	□□□□□ -0.28
SHMT2-231	ENST00000557433	TET2	Q6N021	2002 aa	Predicted RBP	13.31	□□□□□ -0.28
SHMT2-231	ENST00000557433	EYS	Q5T1H1	3165 aa		13.31	□□□□□ -0.28
SHMT2-231	ENST00000557433	SRI	P30626	198 aa		13.31	□□□□□ -0.28
SHMT2-231	ENST00000557433	SELENOV	P59797	346 aa		13.31	□□□□□ -0.28
SHMT2-231	ENST00000557433	C3orf36	Q3SXR2	165 aa		13.31	□□□□□ -0.28
SHMT2-231	ENST00000557433	VWA1	Q6PCB0	445 aa		13.31	□□□□□ -0.28
SHMT2-231	ENST00000557433	C1orf229	Q6ZS94	237 aa	Predicted RBP	13.31	□□□□□ -0.28
SHMT2-231	ENST00000557433	C9orf106	Q8NAJ2	232 aa		13.31	□□□□□ -0.28
SHMT2-231	ENST00000557433	ZNRF1	Q8ND25	227 aa		13.31	□□□□□ -0.28
SHMT2-231	ENST00000557433	BORCS7	Q96B45	105 aa		13.31	□□□□□ -0.28
SHMT2-231	ENST00000557433	DPRX	A6NFQ7	191 aa		13.3	□□□□□ -0.28
SHMT2-231	ENST00000557433	GATA4	P43694	442 aa		13.3	□□□□□ -0.28
SHMT2-231	ENST00000557433	CD69	Q07108	199 aa		13.3	□□□□□ -0.28
SHMT2-231	ENST00000557433	BHLHA15	Q7RTS1	189 aa	Predicted RBP	13.3	□□□□□ -0.28
SHMT2-231	ENST00000557433	LYG1	Q8N1E2	194 aa		13.3	□□□□□ -0.28
SHMT2-231	ENST00000557433	OR2V2	Q96R30	315 aa		13.3	□□□□□ -0.28
SHMT2-231	ENST00000557433	HINT2	Q9BX68	163 aa		13.3	□□□□□ -0.28
SHMT2-231	ENST00000557433	GCM1	Q9NP62	436 aa		13.3	□□□□□ -0.28
SHMT2-231	ENST00000557433	ZNF71	Q9NQZ8	489 aa	Predicted RBP	13.3	□□□□□ -0.28
SHMT2-231	ENST00000557433	DKK4	Q9UBT3	224 aa		13.3	□□□□□ -0.28
SHMT2-231	ENST00000557433	FRMD6-AS1	P0C7T7	363 aa		13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433	IGLC2	P0DOY2	106 aa		13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433	IGLC3	P0DOY3	106 aa		13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433	PMCH	P20382	165 aa		13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433	KLF5	Q13887	457 aa	Predicted RBP	13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433	FAM162B	Q5T6X4	162 aa		13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433	PROCR	Q9UNN8	238 aa		13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433	SLC25A15	Q9Y619	301 aa		13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433	IGHV3OR15-7	A0A075B7D8	119 aa		13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433		A6NNC1	897 aa		13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433	AHRR	A9YTQ3	701 aa		13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433	CD59	P13987	128 aa		13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433	USF1	P22415	310 aa	Predicted RBP	13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433	MOGAT3	Q86VF5	341 aa		13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433	NIT1	Q86X76	327 aa		13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433	OR1L4	Q8NGR5	311 aa		13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433	TSKU	Q8WUA8	353 aa		13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433	SMIM12	Q96EX1	92 aa		13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433	GRAMD2B	Q96HH9	432 aa		13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433	ARRDC1-AS1	Q9H2J1	176 aa		13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433	MYO15A	Q9UKN7	3530 aa		13.29	□□□□□ -0.28
SHMT2-231	ENST00000557433	IGKV1OR2-108	A0A075B7D4	117 aa		13.28	□□□□□ -0.28
SHMT2-231	ENST00000557433	TEX50	A0A1B0GTY4	177 aa		13.28	□□□□□ -0.28
SHMT2-231	ENST00000557433	DLL1	O00548	723 aa		13.28	□□□□□ -0.28
SHMT2-231	ENST00000557433	NPS	P0C0P6	89 aa		13.28	□□□□□ -0.28
SHMT2-231	ENST00000557433	C3orf79	P0CE67	100 aa		13.28	□□□□□ -0.28
SHMT2-231	ENST00000557433	RNASE2	P10153	161 aa	Known RBP	13.28	□□□□□ -0.28
SHMT2-231	ENST00000557433	MGST1	P10620	155 aa	Known RBP	13.28	□□□□□ -0.28
SHMT2-231	ENST00000557433	HNRNPA3	P51991	378 aa	Known RBP	13.28	□□□□□ -0.28
SHMT2-231	ENST00000557433	FXYD3	Q14802	87 aa		13.28	□□□□□ -0.28
SHMT2-231	ENST00000557433	LPAL2	Q16609	132 aa		13.28	□□□□□ -0.28
SHMT2-231	ENST00000557433	SLC25A48	Q6ZT89	311 aa	Known RBP	13.28	□□□□□ -0.28
SHMT2-231	ENST00000557433	OSR1	Q8TAX0	266 aa	Predicted RBP	13.28	□□□□□ -0.28
SHMT2-231	ENST00000557433	MBD6	Q96DN6	1003 aa		13.28	□□□□□ -0.28
SHMT2-231	ENST00000557433	DNAJC4	Q9NNZ3	241 aa		13.28	□□□□□ -0.28
SHMT2-231	ENST00000557433	SERTAD4	Q9NUC0	356 aa		13.28	□□□□□ -0.28
SHMT2-231	ENST00000557433	MRPS16	Q9Y3D3	137 aa	Known RBP	13.28	□□□□□ -0.28

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