RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 GNG13Q9P2W3 67 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 PRNDQ9UKY0 176 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 GOLT1BQ9Y3E0 138 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 RAI1Q7Z5J4 1906 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-229ENST00000557348 ATRXP46100 2492 aa10.33□□□□□ -0.76
SHMT2-229ENST00000557348 PRB1P04280 392 aa10.33□□□□□ -0.76
SHMT2-229ENST00000557348 IGHV1-8P0DP01 117 aa10.33□□□□□ -0.76
SHMT2-229ENST00000557348 CCL3L1P16619 93 aa10.33□□□□□ -0.76
SHMT2-229ENST00000557348 IGFBP2P18065 325 aa10.33□□□□□ -0.76
SHMT2-229ENST00000557348 PSMB3P49720 205 aa10.33□□□□□ -0.76
SHMT2-229ENST00000557348 PRRX1P54821 245 aa10.33□□□□□ -0.76
SHMT2-229ENST00000557348 ATP5IP56385 69 aaPredicted RBP10.33□□□□□ -0.76
SHMT2-229ENST00000557348 LRRC75BQ2VPJ9 315 aa10.33□□□□□ -0.76
SHMT2-229ENST00000557348 PDZD11Q5EBL8 140 aa10.33□□□□□ -0.76
SHMT2-229ENST00000557348 GBGT1Q8N5D6 347 aa10.33□□□□□ -0.76
SHMT2-229ENST00000557348 OR10P1Q8NGE3 313 aa10.33□□□□□ -0.76
SHMT2-229ENST00000557348 OR2T10Q8NGZ9 312 aa10.33□□□□□ -0.76
SHMT2-229ENST00000557348 LEAP2Q969E1 77 aa10.33□□□□□ -0.76
SHMT2-229ENST00000557348 TMEM133Q9H2Q1 129 aa10.33□□□□□ -0.76
SHMT2-229ENST00000557348 FOXA2Q9Y261 457 aaPredicted RBP10.33□□□□□ -0.76
SHMT2-229ENST00000557348 ZNF257Q9Y2Q1 563 aa10.33□□□□□ -0.76
SHMT2-229ENST00000557348 AMMECR1Q9Y4X0 333 aaPredicted RBP10.33□□□□□ -0.76
SHMT2-229ENST00000557348 C15orf61A6NNL5 157 aa10.32□□□□□ -0.76
SHMT2-229ENST00000557348 H3BP45 60 aa10.32□□□□□ -0.76
SHMT2-229ENST00000557348 MMP23AO75900 390 aa10.32□□□□□ -0.76
SHMT2-229ENST00000557348 ESDP10768 282 aa10.32□□□□□ -0.76
SHMT2-229ENST00000557348 MC5RP33032 325 aa10.32□□□□□ -0.76
SHMT2-229ENST00000557348 GALR1P47211 349 aa10.32□□□□□ -0.76
SHMT2-229ENST00000557348 UQCRFS1P47985 274 aa10.32□□□□□ -0.76
SHMT2-229ENST00000557348 CNN1P51911 297 aaKnown RBP10.32□□□□□ -0.76
SHMT2-229ENST00000557348 CEBPGP53567 150 aa10.32□□□□□ -0.76
SHMT2-229ENST00000557348 MEF2BQ02080 365 aaPredicted RBP10.32□□□□□ -0.76
SHMT2-229ENST00000557348 SLC38A11Q08AI6 406 aa10.32□□□□□ -0.76
SHMT2-229ENST00000557348 TMEM267Q0VDI3 215 aaPredicted RBP10.32□□□□□ -0.76
SHMT2-229ENST00000557348 ANKRD39Q53RE8 183 aa10.32□□□□□ -0.76
SHMT2-229ENST00000557348 ZNF841Q6ZN19 808 aa10.32□□□□□ -0.76
SHMT2-229ENST00000557348 PDPNQ86YL7 162 aa10.32□□□□□ -0.76
SHMT2-229ENST00000557348 VSTM2AQ8TAG5 236 aa10.32□□□□□ -0.76
SHMT2-229ENST00000557348 SMIM7Q9BQ49 75 aa10.32□□□□□ -0.76
SHMT2-229ENST00000557348 SNHG12Q9BXW3 62 aa10.32□□□□□ -0.76
SHMT2-229ENST00000557348 ATMQ13315 3056 aa10.32□□□□□ -0.76
SHMT2-229ENST00000557348 BSNQ9UPA5 3926 aa10.32□□□□□ -0.76
SHMT2-229ENST00000557348 ZNF705GA8MUZ8 300 aaPredicted RBP10.31□□□□□ -0.76
SHMT2-229ENST00000557348 IGHV3-7P01780 117 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 LIPFP07098 398 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 CT45A6P0DMU7 189 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 CT45A5P0DMU8 189 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 CT45A7P0DMV0 189 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 GNB2P62879 340 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 RELBQ01201 579 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 FOXL1Q12952 345 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 MRPL41Q8IXM3 137 aaKnown RBP10.31□□□□□ -0.76
SHMT2-229ENST00000557348 ZNF525Q8N782 197 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 OR5AN1Q8NGI8 311 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 OR4A5Q8NH83 315 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 TMEM147Q9BVK8 224 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 ENY2Q9NPA8 101 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 RPRMQ9NS64 109 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 BET1LQ9NYM9 111 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 DSCAML1Q8TD84 2053 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 COL6A6A6NMZ7 2263 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 A6NNC1 897 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 FCN3O75636 299 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 OR9G9P0C7N8 305 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 TMEM177Q53S58 311 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 C16orf82Q7Z2V1 217 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 ABHD12Q8N2K0 398 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 OR4C13Q8NGP0 309 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 CLEC7AQ9BXN2 247 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 QTRT1Q9BXR0 403 aaKnown RBP10.31□□□□□ -0.76
SHMT2-229ENST00000557348 PATZ1Q9HBE1 687 aaKnown RBP10.31□□□□□ -0.76
SHMT2-229ENST00000557348 TMEM14BQ9NUH8 114 aa10.31□□□□□ -0.76
SHMT2-229ENST00000557348 ARFGEF3Q5TH69 2177 aa10.3□□□□□ -0.76
SHMT2-229ENST00000557348 ICE1Q9Y2F5 2266 aa10.3□□□□□ -0.76
SHMT2-229ENST00000557348 PPIAL4CA0A0B4J2A2 164 aa10.3□□□□□ -0.76
SHMT2-229ENST00000557348 M0R1W7 72 aa10.3□□□□□ -0.76
SHMT2-229ENST00000557348 KALRNO60229 2985 aa10.3□□□□□ -0.76
SHMT2-229ENST00000557348 PPIAL4GP0DN37 164 aa10.3□□□□□ -0.76
SHMT2-229ENST00000557348 HSPE1P61604 102 aaKnown RBP10.3□□□□□ -0.76
SHMT2-229ENST00000557348 RPL19P84098 196 aaKnown RBP10.3□□□□□ -0.76
SHMT2-229ENST00000557348 OR4A47Q6IF82 309 aa10.3□□□□□ -0.76
SHMT2-229ENST00000557348 LY6G5BQ8NDX9 201 aa10.3□□□□□ -0.76
SHMT2-229ENST00000557348 OR5B3Q8NH48 314 aa10.3□□□□□ -0.76
SHMT2-229ENST00000557348 MIEN1Q9BRT3 115 aa10.3□□□□□ -0.76
SHMT2-229ENST00000557348 HEYLQ9NQ87 328 aaPredicted RBP10.3□□□□□ -0.76
SHMT2-229ENST00000557348 NAGKQ9UJ70 344 aa10.3□□□□□ -0.76
SHMT2-229ENST00000557348 WASHC3Q9Y3C0 194 aa10.3□□□□□ -0.76
SHMT2-229ENST00000557348 ARID1AO14497 2285 aa10.3□□□□□ -0.76
SHMT2-229ENST00000557348 HCFC1P51610 2035 aa10.29□□□□□ -0.76
SHMT2-229ENST00000557348 CTXND1A0A1B0GTU2 59 aa10.29□□□□□ -0.76
SHMT2-229ENST00000557348 A0A1B0GV50 99 aa10.29□□□□□ -0.76
SHMT2-229ENST00000557348 ZFP92A6NM28 416 aa10.29□□□□□ -0.76
SHMT2-229ENST00000557348 LYNX1G3V0Z9 82 aa10.29□□□□□ -0.76
SHMT2-229ENST00000557348 H0YJW9 148 aa10.29□□□□□ -0.76
SHMT2-229ENST00000557348 LYNX1P0DP58 116 aa10.29□□□□□ -0.76
SHMT2-229ENST00000557348 EFNA4P52798 201 aa10.29□□□□□ -0.76
SHMT2-229ENST00000557348 LINC00205P59089 165 aa10.29□□□□□ -0.76
SHMT2-229ENST00000557348 RPL23P62829 140 aaKnown RBP10.29□□□□□ -0.76
SHMT2-229ENST00000557348 COX19Q49B96 90 aa10.29□□□□□ -0.76
SHMT2-229ENST00000557348 LHX4Q969G2 390 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms