RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 KBTBD11O94819 623 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 CNIH1O95406 144 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 HRASP01112 189 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 IL6RP08887 468 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-215ENST00000552823 FABP4P15090 132 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 TDGF1P3P51864 188 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 SUMO1P63165 101 aaKnown RBP4.56□□□□□ -1.68
LIMA1-215ENST00000552823 SERF2P84101 59 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 FXYD3Q14802 87 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 ELOBQ15370 118 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 C21orf62-AS1Q17RA5 79 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 ARL6IP6Q8N6S5 226 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 NPIPB3Q92617 1050 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 RPUSD1Q9UJJ7 312 aaKnown RBP4.56□□□□□ -1.68
LIMA1-215ENST00000552823 TIMM8BQ9Y5J9 83 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-215ENST00000552823 C2CD3Q4AC94 2353 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 BTBD17A6NE02 478 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 SH2D7A6NKC9 451 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-215ENST00000552823 K7ENP7 123 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 LHBP01229 141 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 IGHV3-23P01764 117 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 NPPCP23582 126 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 RAB7AP51149 207 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 NEIL1Q96FI4 390 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-215ENST00000552823 LINC00479Q96M42 142 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 PRO1933Q9H354 126 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 FBXL15Q9H469 300 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 NGBQ9NPG2 151 aa4.56□□□□□ -1.68
LIMA1-215ENST00000552823 TEX50A0A1B0GTY4 177 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 CLDN34H7C241 214 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 TRGC1P0CF51 173 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 PYYP10082 97 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 CD33P20138 364 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 CRYBB3P26998 211 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 GALR1P47211 349 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 RPL23P62829 140 aaKnown RBP4.55□□□□□ -1.68
LIMA1-215ENST00000552823 ZNF90Q03938 601 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 C1QL4Q86Z23 238 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 IMMP2LQ96T52 175 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 GGTLC1Q9BX51 225 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 FUT9Q9Y231 359 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 CELSR1Q9NYQ6 3014 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 FASNP49327 2511 aaKnown RBP4.55□□□□□ -1.68
LIMA1-215ENST00000552823 ZNF705GA8MUZ8 300 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-215ENST00000552823 LY86O95711 162 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 UQCRFS1P47985 274 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 MEOX2P50222 304 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 RND2P52198 227 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 RAB31Q13636 194 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 SSX2Q16385 188 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 KIAA1644Q3SXP7 199 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 C9orf152Q5JTZ5 239 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 CFAP161Q6P656 301 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 TEPPQ6URK8 271 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 GAL3ST2Q9H3Q3 398 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 UBTD1Q9HAC8 227 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 SDF2L1Q9HCN8 221 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 NPVFQ9HCQ7 196 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 INSIG2Q9Y5U4 225 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 ZNF729A6NN14 1252 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-215ENST00000552823 C15orf61A6NNL5 157 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 SHISA9B4DS77 424 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 FAM90A26D6RGX4 464 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 F2RL2O00254 374 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 FCN1O00602 326 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 CLN5O75503 358 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 CA1P00915 261 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-215ENST00000552823 FRMD6-AS1P0C7T7 363 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 AREGP15514 252 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 VDAC2P45880 294 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-215ENST00000552823 RANP62826 216 aaKnown RBP4.55□□□□□ -1.68
LIMA1-215ENST00000552823 RPL8P62917 257 aaKnown RBP4.55□□□□□ -1.68
LIMA1-215ENST00000552823 RPP30P78346 268 aaKnown RBP4.55□□□□□ -1.68
LIMA1-215ENST00000552823 ATP6V1FQ16864 119 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 MORN5Q5VZ52 161 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 TRAT1Q6PIZ9 186 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 MBD3L1Q8WWY6 194 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 EAF1Q96JC9 268 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-215ENST00000552823 NABP2Q9BQ15 211 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 PSMG3Q9BT73 122 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-215ENST00000552823 SSBP3Q9BWW4 388 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-215ENST00000552823 ZNF430Q9H8G1 570 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-215ENST00000552823 MRPL36Q9P0J6 103 aaKnown RBP4.55□□□□□ -1.68
LIMA1-215ENST00000552823 WDR83OSQ9Y284 106 aa4.55□□□□□ -1.68
LIMA1-215ENST00000552823 CUBNO60494 3623 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 PPIAL4CA0A0B4J2A2 164 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 GRIFINA4D1Z8 144 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 NCBP2LA6PVI3 153 aaKnown RBP4.54□□□□□ -1.68
LIMA1-215ENST00000552823 AP4M1O00189 453 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 UPK2O00526 184 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 RBP4P02753 201 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 PPIAL4GP0DN37 164 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 ERHP84090 104 aaKnown RBP4.54□□□□□ -1.68
LIMA1-215ENST00000552823 NHLH1Q02575 133 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 EIF4EBP1Q13541 118 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-215ENST00000552823 RUSC1-AS1Q66K80 236 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 OR1B1Q8NGR6 318 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 RPEQ96AT9 228 aa4.54□□□□□ -1.68
LIMA1-215ENST00000552823 YTHDF2Q9Y5A9 579 aaKnown RBP4.54□□□□□ -1.68
LIMA1-215ENST00000552823 RAI1Q7Z5J4 1906 aaPredicted RBP4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms