RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 IFITM10A6NMD0 228 aa7.26□□□□□ -1.25
CLIP1-218ENST00000545889 RHBDL1O75783 438 aa7.26□□□□□ -1.25
CLIP1-218ENST00000545889 CRISP2P16562 243 aa7.26□□□□□ -1.25
CLIP1-218ENST00000545889 SNAI3Q3KNW1 292 aa7.26□□□□□ -1.25
CLIP1-218ENST00000545889 LINC01590Q5TEZ4 76 aa7.26□□□□□ -1.25
CLIP1-218ENST00000545889 TEX38Q6PEX7 206 aa7.26□□□□□ -1.25
CLIP1-218ENST00000545889 SH3BGRL3Q9H299 93 aa7.26□□□□□ -1.25
CLIP1-218ENST00000545889 FBXL15Q9H469 300 aa7.26□□□□□ -1.25
CLIP1-218ENST00000545889 LHFPL6Q9Y693 200 aa7.26□□□□□ -1.25
CLIP1-218ENST00000545889 IGKV3OR2-268A0A0C4DH90 116 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 GPX1P07203 203 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 LINC00869P0C866 280 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 CA7P43166 264 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 NANOS3P60323 173 aaKnown RBP7.25□□□□□ -1.25
CLIP1-218ENST00000545889 TCTEX1D1Q8N7M0 179 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 TUBD1Q9UJT1 453 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 SELENOKQ9Y6D0 94 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 NAV2Q8IVL1 2488 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 PLAUP00749 431 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 CD8AP01732 235 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 CSN3P07498 182 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 OR5AL1P0C617 328 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 Q6ZS92 163 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 GBGT1Q8N5D6 347 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 NPVFQ9HCQ7 196 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 MOB4Q9Y3A3 225 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 CHD3Q12873 2000 aaKnown RBP7.25□□□□□ -1.25
CLIP1-218ENST00000545889 PRR14LQ5THK1 2151 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 SLC25A16P16260 332 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 LHX2P50458 406 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 HIST1H1AQ02539 215 aaPredicted RBP7.25□□□□□ -1.25
CLIP1-218ENST00000545889 ELOBQ15370 118 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 PPP1R27Q86WC6 154 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 OR13A1Q8NGR1 328 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 SLC25A33Q9BSK2 321 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 LYRM2Q9NU23 88 aaPredicted RBP7.25□□□□□ -1.25
CLIP1-218ENST00000545889 MRPS18AQ9NVS2 196 aaKnown RBP7.25□□□□□ -1.25
CLIP1-218ENST00000545889 TNCP24821 2201 aa7.25□□□□□ -1.25
CLIP1-218ENST00000545889 KBTBD11O94819 623 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 CD5P06127 495 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 SCGB1C2P0DMR2 95 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 CD33P20138 364 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 PSG7Q13046 419 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 GAGE1Q13065 139 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 ZNF154Q13106 437 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 GTF2H5Q6ZYL4 71 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 LSM10Q969L4 123 aaKnown RBP7.24□□□□□ -1.25
CLIP1-218ENST00000545889 PAXXQ9BUH6 204 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 SPRR3Q9UBC9 169 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 IGLV3-32A0A0A0MS00 114 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 ZNF737O75373 536 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 CDS2O95674 445 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 MYOD1P15172 320 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 MAS1LP35410 378 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 CLDN18P56856 261 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 RIGQ13278 110 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 ZNF672Q499Z4 452 aaPredicted RBP7.24□□□□□ -1.25
CLIP1-218ENST00000545889 C1QL4Q86Z23 238 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 LRRC75AQ8NAA5 344 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 SVIPQ8NHG7 77 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 PCNX3Q9H6A9 2034 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 SNURFLB1AK76 121 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 MPDU1O75352 247 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 REG1AP05451 166 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 HSPE1P61604 102 aaKnown RBP7.24□□□□□ -1.25
CLIP1-218ENST00000545889 MDS2Q8NDY4 140 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 SMIM8Q96KF7 97 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 FBXL7Q9UJT9 491 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 RNF114Q9Y508 228 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 REV3LO60673 3130 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 LRRK2Q5S007 2527 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 FAM90A10PA6NDY2 464 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 FAM90A18PA6NE21 464 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 FAM90A16PA6NEW6 464 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 FAM90A20PA6NIJ5 464 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 FAM90A8PA6NJQ4 464 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 FAM90A7PA6NKC0 464 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 FAM90A22PA8MWA6 464 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 FAM90A12PA8MX19 464 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 FAM90A5PA8MXJ8 464 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 FAM90A23PA8MXZ1 464 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 RNF223E7ERA6 249 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 ZNF207O43670 478 aaKnown RBP7.24□□□□□ -1.25
CLIP1-218ENST00000545889 FCGR3AP08637 254 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 SCTP09683 121 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 FAM90A15PP0C7V4 464 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 FAM90A13PP0C7W8 464 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 FAM90A14PP0C7W9 464 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 FAM90A24PP0C7X0 464 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 SMIM12Q96EX1 92 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 MRPS18CQ9Y3D5 142 aaKnown RBP7.24□□□□□ -1.25
CLIP1-218ENST00000545889 SORL1Q92673 2214 aa7.24□□□□□ -1.25
CLIP1-218ENST00000545889 FREM1Q5H8C1 2179 aa7.23□□□□□ -1.25
CLIP1-218ENST00000545889 A0A1W2PP11 408 aa7.23□□□□□ -1.25
CLIP1-218ENST00000545889 DEDDO75618 318 aa7.23□□□□□ -1.25
CLIP1-218ENST00000545889 C10orf91Q5T1B1 145 aa7.23□□□□□ -1.25
CLIP1-218ENST00000545889 C10orf128Q5T292 105 aa7.23□□□□□ -1.25
CLIP1-218ENST00000545889 RTN4RL2Q86UN3 420 aa7.23□□□□□ -1.25
CLIP1-218ENST00000545889 MRPL30Q8TCC3 161 aaKnown RBP7.23□□□□□ -1.25
CLIP1-218ENST00000545889 PROK2Q9HC23 129 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms