RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 MLXQ9UH92 298 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 SSR3Q9UNL2 185 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 DNAH1Q9P2D7 4330 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 SULT1C2O00338 296 aa6.33□□□□□ -1.4
USP28-215ENST00000545608 UPK2O00526 184 aa6.33□□□□□ -1.4
USP28-215ENST00000545608 SCAF4O95104 1147 aaKnown RBP6.33□□□□□ -1.4
USP28-215ENST00000545608 DHFRP00374 187 aa6.33□□□□□ -1.4
USP28-215ENST00000545608 PPYP01298 95 aa6.33□□□□□ -1.4
USP28-215ENST00000545608 DEFA4P12838 97 aa6.33□□□□□ -1.4
USP28-215ENST00000545608 HIST1H1BP16401 226 aaKnown RBP6.33□□□□□ -1.4
USP28-215ENST00000545608 HLA-DMAP28067 261 aa6.33□□□□□ -1.4
USP28-215ENST00000545608 OR2B8PP59922 312 aa6.33□□□□□ -1.4
USP28-215ENST00000545608 NCS1P62166 190 aa6.33□□□□□ -1.4
USP28-215ENST00000545608 SRSF3P84103 164 aaKnown RBP6.33□□□□□ -1.4
USP28-215ENST00000545608 MSMO1Q15800 293 aa6.33□□□□□ -1.4
USP28-215ENST00000545608 FAM106AQ4KMX7 169 aa6.33□□□□□ -1.4
USP28-215ENST00000545608 OR4A47Q6IF82 309 aa6.33□□□□□ -1.4
USP28-215ENST00000545608 UNQ9165/PRO28630Q6UXU0 137 aa6.33□□□□□ -1.4
USP28-215ENST00000545608 TCTE3Q8IZS6 198 aa6.33□□□□□ -1.4
USP28-215ENST00000545608 SPAG16Q8N0X2 631 aa6.33□□□□□ -1.4
USP28-215ENST00000545608 OR4A5Q8NH83 315 aa6.33□□□□□ -1.4
USP28-215ENST00000545608 IL17DQ8TAD2 202 aa6.33□□□□□ -1.4
USP28-215ENST00000545608 SLC5A7Q9GZV3 580 aa6.33□□□□□ -1.4
USP28-215ENST00000545608 HRASLSQ9HDD0 168 aa6.33□□□□□ -1.4
USP28-215ENST00000545608 TRBV7-1A0A0A6YYK4 115 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 IGHV3-35A0A0C4DH35 117 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 LOC105371267A0A1B0GV96 52 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 IGLC7A0M8Q6 106 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 A8MWP6 167 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 RBFOX2O43251 390 aaKnown RBP eCLIP6.32□□□□□ -1.4
USP28-215ENST00000545608 JTBO76095 146 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 HPRT1P00492 218 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 C8orf88P0DMB2 117 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 C4BPBP20851 252 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 NKX2-5P52952 324 aaPredicted RBP6.32□□□□□ -1.4
USP28-215ENST00000545608 FXYD4P59646 89 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 POU2AF1Q16633 256 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 ZNF585BQ52M93 769 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 IDNKQ5T6J7 187 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 FAM122CQ6P4D5 195 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 BTNL8Q6UX41 500 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 ZNF818PQ6ZRF7 136 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 SLC16A13Q7RTY0 426 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 OR10W1Q8NGF6 305 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 OR52B4Q8NGK2 314 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 ZNF502Q8TBZ5 544 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 ZFAND1Q8TCF1 268 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 AP3S1Q92572 193 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 CXorf58Q96LI9 332 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 OVOL2Q9BRP0 275 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 AUNIPQ9H7T9 357 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 ETV7Q9Y603 341 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 STARD9Q9P2P6 4700 aa6.32□□□□□ -1.4
USP28-215ENST00000545608 LOC102724200A0A096LPH7 203 aaPredicted RBP6.31□□□□□ -1.4
USP28-215ENST00000545608 LOC100506127A0A0U1RQW1 187 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 MEIS3P1A6NDR6 274 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 S1PR2O95136 353 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 RPA2P15927 270 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 NQO2P16083 231 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 PTBP1P26599 531 aaKnown RBP eCLIP6.31□□□□□ -1.4
USP28-215ENST00000545608 GPR183P32249 361 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 RORCP51449 518 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 TAS2R31P59538 309 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 CATR1Q13166 79 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 ASAH1Q13510 395 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 PLET1Q6UQ28 207 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 CCDC190Q86UF4 302 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 SNX29P2Q8IUI4 249 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 STPG3Q8N7X2 389 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 GDPD1Q8N9F7 314 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 OR51H1Q8NH63 302 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 ENKURQ8TC29 256 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 GIMAP1Q8WWP7 306 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 GGTLC1Q9BX51 225 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 COMMD5Q9GZQ3 224 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 TMEM140Q9NV12 185 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 MRPL27Q9P0M9 148 aaKnown RBP6.31□□□□□ -1.4
USP28-215ENST00000545608 PLA2G2DQ9UNK4 145 aa6.31□□□□□ -1.4
USP28-215ENST00000545608 A0A0A6YYH2 397 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 TRAV25A0A0B4J276 109 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 TEX50A0A1B0GTY4 177 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 A6NJ64 397 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 TGOLN2O43493 480 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 C1QBP02746 253 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 GNRHRP30968 328 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 HTR2BP41595 481 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 INPP1P49441 399 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 MFAP2P55001 183 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 ELLP55199 621 aaPredicted RBP6.3□□□□□ -1.4
USP28-215ENST00000545608 RAB14P61106 215 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 ANKRD55Q3KP44 614 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 AADACL3Q5VUY0 350 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 TMEM17Q86X19 198 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 DMBX1Q8NFW5 382 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 OR5AP2Q8NGF4 316 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 OR1L6Q8NGR2 347 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 LRRC20Q8TCA0 184 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 MARC2Q969Z3 335 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 ST6GAL2Q96JF0 529 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 HYLS1Q96M11 299 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 162.1 ms