RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 HIST1H2BCP62807 126 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 FOXF2Q12947 444 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 HIST2H2BEQ16778 126 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.82□□□□□ -1.64
VPS50-220ENST00000544910 CD177Q8N6Q3 437 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 NEUROG1Q92886 237 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 HIST1H2BHQ93079 126 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 HIST1H2BNQ99877 126 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 HIST1H2BMQ99879 126 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 IL4P05112 153 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 DUTP33316 252 aaKnown RBP4.82□□□□□ -1.64
VPS50-220ENST00000544910 RPL23P62829 140 aaKnown RBP4.82□□□□□ -1.64
VPS50-220ENST00000544910 RTP5Q14D33 572 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 HIST3H2BBQ8N257 126 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 OR4A5Q8NH83 315 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 TMEM186Q96B77 213 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 IL36BQ9NZH7 164 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 CRIM1Q9NZV1 1036 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 COL5A1P20908 1838 aaPredicted RBP4.82□□□□□ -1.64
VPS50-220ENST00000544910 ABCA7Q8IZY2 2146 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 CDX4O14627 284 aaPredicted RBP4.82□□□□□ -1.64
VPS50-220ENST00000544910 PSPNO60542 156 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 TDGF1P13385 188 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 KIR2DL2P43627 348 aaPredicted RBP4.82□□□□□ -1.64
VPS50-220ENST00000544910 ATP5G3P48201 142 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 TWIST1Q15672 202 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 FAM201AQ5SY85 155 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 TMEM14EPQ6UXP3 125 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 C5orf30Q96GV9 206 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 PRDM13Q9H4Q3 707 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 CHODLQ9H9P2 273 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 THYN1Q9P016 225 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 HIGD1AQ9Y241 93 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 TBL2Q9Y4P3 447 aaKnown RBP4.82□□□□□ -1.64
VPS50-220ENST00000544910 INSIG2Q9Y5U4 225 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 CACNA1IQ9P0X4 2223 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 SPTBP11277 2137 aa4.82□□□□□ -1.64
VPS50-220ENST00000544910 C9JQL5 133 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 M0R3E3 92 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 RBFOX2O43251 390 aaKnown RBP eCLIP4.81□□□□□ -1.64
VPS50-220ENST00000544910 OR52E5Q8NH55 327 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 GATAD1Q8WUU5 269 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 SNRNP40Q96DI7 357 aaKnown RBP4.81□□□□□ -1.64
VPS50-220ENST00000544910 RASL11BQ9BPW5 248 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 NABP2Q9BQ15 211 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 TMEM106BQ9NUM4 274 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 SPCS1Q9Y6A9 102 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 GRIFINA4D1Z8 144 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 TNFSF13O75888 250 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 IGFBP2P18065 325 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 GPX4P36969 197 aaPredicted RBP4.81□□□□□ -1.64
VPS50-220ENST00000544910 ARF6P62330 175 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 RELQ04864 619 aaPredicted RBP4.81□□□□□ -1.64
VPS50-220ENST00000544910 FAM27E3Q08E93 113 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 RNFT1Q5M7Z0 435 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 Q5PR19 223 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 C1orf194Q5T5A4 169 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 AMMECR1LQ6DCA0 310 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 SPSB3Q6PJ21 355 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 PNKDQ8N490 385 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 HIST1H2BLQ99880 126 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 AGMATQ9BSE5 352 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 SOX21Q9Y651 276 aaPredicted RBP4.81□□□□□ -1.64
VPS50-220ENST00000544910 SCO2A0A1W2PP80 73 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 CXCL1P09341 107 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 FAM216BQ8N7L0 139 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 OR4C13Q8NGP0 309 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 RAB1CQ92928 201 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 METRNQ9UJH8 293 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 MLNRO43193 412 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 SLC25A17O43808 307 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 C8orf88P0DMB2 117 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 ZNF137PP52743 207 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 SELENOTP62341 195 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 WDR86Q86TI4 376 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 COPS9Q8WXC6 57 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 COQ2Q96H96 371 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 IMMP2LQ96T52 175 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 SPANXA1Q9NS26 97 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 RNF115Q9Y4L5 304 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 LINC00312Q9Y6C7 94 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 TRBV24-1A0A075B6N3 115 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 APELAP0DMC3 54 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 SCGB1A1P11684 91 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 EGR1P18146 543 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 EMP1P54849 157 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 RPS20P60866 119 aaKnown RBP4.81□□□□□ -1.64
VPS50-220ENST00000544910 MEF2CQ06413 473 aaPredicted RBP4.81□□□□□ -1.64
VPS50-220ENST00000544910 OSR1Q8TAX0 266 aaPredicted RBP4.81□□□□□ -1.64
VPS50-220ENST00000544910 IFI27L2Q9H2X8 130 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 SLC25A15Q9Y619 301 aa4.81□□□□□ -1.64
VPS50-220ENST00000544910 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.8□□□□□ -1.64
VPS50-220ENST00000544910 RPL27AP46776 148 aaKnown RBP4.8□□□□□ -1.64
VPS50-220ENST00000544910 Q8NFD4 153 aa4.8□□□□□ -1.64
VPS50-220ENST00000544910 OR9G1Q8NH87 305 aa4.8□□□□□ -1.64
VPS50-220ENST00000544910 LYPD6BQ8NI32 183 aa4.8□□□□□ -1.64
VPS50-220ENST00000544910 C14orf144Q96I85 54 aa4.8□□□□□ -1.64
VPS50-220ENST00000544910 IGHV3-21A0A0B4J1V1 117 aa4.8□□□□□ -1.64
VPS50-220ENST00000544910 SRRM5B3KS81 715 aa4.8□□□□□ -1.64
VPS50-220ENST00000544910 TMEM262E9PQX1 116 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 102.4 ms