RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 KRASP01116 189 aa11.32□□□□□ -0.6
CLSTN3-213ENST00000541953 G6PCP35575 357 aa11.32□□□□□ -0.6
CLSTN3-213ENST00000541953 RFX2P48378 723 aa11.32□□□□□ -0.6
CLSTN3-213ENST00000541953 GABARAPL2P60520 117 aa11.32□□□□□ -0.6
CLSTN3-213ENST00000541953 Q56UQ5 140 aa11.32□□□□□ -0.6
CLSTN3-213ENST00000541953 IDNKQ5T6J7 187 aa11.32□□□□□ -0.6
CLSTN3-213ENST00000541953 LAMTOR1Q6IAA8 161 aa11.32□□□□□ -0.6
CLSTN3-213ENST00000541953 TPRA1Q86W33 373 aa11.32□□□□□ -0.6
CLSTN3-213ENST00000541953 OR5AP2Q8NGF4 316 aa11.32□□□□□ -0.6
CLSTN3-213ENST00000541953 OR1L8Q8NGR8 309 aa11.32□□□□□ -0.6
CLSTN3-213ENST00000541953 GIMAP1Q8WWP7 306 aa11.32□□□□□ -0.6
CLSTN3-213ENST00000541953 RHPN1-AS1Q9BWJ2 59 aa11.32□□□□□ -0.6
CLSTN3-213ENST00000541953 FBXL17Q9UF56 701 aa11.32□□□□□ -0.6
CLSTN3-213ENST00000541953 OR51B2Q9Y5P1 312 aa11.32□□□□□ -0.6
CLSTN3-213ENST00000541953 ETV7Q9Y603 341 aa11.32□□□□□ -0.6
CLSTN3-213ENST00000541953 IGHV7-4-1A0A0J9YVY3 117 aa11.31□□□□□ -0.6
CLSTN3-213ENST00000541953 C15orf62A8K5M9 175 aa11.31□□□□□ -0.6
CLSTN3-213ENST00000541953 K7EMT4 169 aa11.31□□□□□ -0.6
CLSTN3-213ENST00000541953 PGLYRP1O75594 196 aaPredicted RBP11.31□□□□□ -0.6
CLSTN3-213ENST00000541953 FGF2P09038 288 aa11.31□□□□□ -0.6
CLSTN3-213ENST00000541953 F2RP25116 425 aa11.31□□□□□ -0.6
CLSTN3-213ENST00000541953 TGFBR1P36897 503 aa11.31□□□□□ -0.6
CLSTN3-213ENST00000541953 LPAR6P43657 344 aa11.31□□□□□ -0.6
CLSTN3-213ENST00000541953 FAM90A2PQ658T7 463 aa11.31□□□□□ -0.6
CLSTN3-213ENST00000541953 SPSB3Q6PJ21 355 aa11.31□□□□□ -0.6
CLSTN3-213ENST00000541953 LILRB2Q8N423 598 aa11.31□□□□□ -0.6
CLSTN3-213ENST00000541953 GBGT1Q8N5D6 347 aa11.31□□□□□ -0.6
CLSTN3-213ENST00000541953 FAM24BQ8N5W8 94 aa11.31□□□□□ -0.6
CLSTN3-213ENST00000541953 LSM10Q969L4 123 aaKnown RBP11.31□□□□□ -0.6
CLSTN3-213ENST00000541953 AIFM2Q9BRQ8 373 aa11.31□□□□□ -0.6
CLSTN3-213ENST00000541953 CSTL1Q9H114 145 aa11.31□□□□□ -0.6
CLSTN3-213ENST00000541953 EHFQ9NZC4 300 aa11.31□□□□□ -0.6
CLSTN3-213ENST00000541953 I3L2K1 104 aa11.3□□□□□ -0.6
CLSTN3-213ENST00000541953 APOHP02749 345 aaPredicted RBP11.3□□□□□ -0.6
CLSTN3-213ENST00000541953 THOC7Q6I9Y2 204 aaKnown RBP11.3□□□□□ -0.6
CLSTN3-213ENST00000541953 TMEM116Q8NCL8 245 aa11.3□□□□□ -0.6
CLSTN3-213ENST00000541953 OR11H2Q8NH07 326 aa11.3□□□□□ -0.6
CLSTN3-213ENST00000541953 MOB3AQ96BX8 217 aa11.3□□□□□ -0.6
CLSTN3-213ENST00000541953 RARRES2Q99969 163 aa11.3□□□□□ -0.6
CLSTN3-213ENST00000541953 SSR3Q9UNL2 185 aa11.3□□□□□ -0.6
CLSTN3-213ENST00000541953 LOC100506127A0A0U1RQW1 187 aa11.29□□□□□ -0.6
CLSTN3-213ENST00000541953 MPTX1A8MV57 137 aa11.29□□□□□ -0.6
CLSTN3-213ENST00000541953 PMP2P02689 132 aa11.29□□□□□ -0.6
CLSTN3-213ENST00000541953 HERV-K104P61576 105 aa11.29□□□□□ -0.6
CLSTN3-213ENST00000541953 TMEM217Q8N7C4 229 aa11.29□□□□□ -0.6
CLSTN3-213ENST00000541953 OR10C1Q96KK4 312 aa11.29□□□□□ -0.6
CLSTN3-213ENST00000541953 ZNF2Q9BSG1 426 aaPredicted RBP11.29□□□□□ -0.6
CLSTN3-213ENST00000541953 C11orf68Q9H3H3 251 aaKnown RBP11.29□□□□□ -0.6
CLSTN3-213ENST00000541953 ANAPC10Q9UM13 185 aa11.29□□□□□ -0.6
CLSTN3-213ENST00000541953 AGRNO00468 2067 aa11.28□□□□□ -0.6
CLSTN3-213ENST00000541953 IGHV3-66A0A0C4DH42 116 aa11.28□□□□□ -0.6
CLSTN3-213ENST00000541953 C15orf61A6NNL5 157 aa11.28□□□□□ -0.6
CLSTN3-213ENST00000541953 NUPL2O15504 423 aaKnown RBP11.28□□□□□ -0.6
CLSTN3-213ENST00000541953 IGKV1-39P01597 117 aa11.28□□□□□ -0.6
CLSTN3-213ENST00000541953 IGKV1D-39P04432 117 aa11.28□□□□□ -0.6
CLSTN3-213ENST00000541953 ERVK-16P61578 105 aa11.28□□□□□ -0.6
CLSTN3-213ENST00000541953 LEMD1Q68G75 181 aa11.28□□□□□ -0.6
CLSTN3-213ENST00000541953 HSD17B13Q7Z5P4 300 aaPredicted RBP11.28□□□□□ -0.6
CLSTN3-213ENST00000541953 C11orf45Q8TAV5 145 aa11.28□□□□□ -0.6
CLSTN3-213ENST00000541953 ST8SIA2Q92186 375 aa11.28□□□□□ -0.6
CLSTN3-213ENST00000541953 SLC25A46Q96AG3 418 aa11.28□□□□□ -0.6
CLSTN3-213ENST00000541953 DGCR14Q96DF8 476 aaKnown RBP11.28□□□□□ -0.6
CLSTN3-213ENST00000541953 ATP6V0BQ99437 205 aa11.28□□□□□ -0.6
CLSTN3-213ENST00000541953 TMEM14BQ9NUH8 114 aa11.28□□□□□ -0.6
CLSTN3-213ENST00000541953 RAB26Q9ULW5 256 aa11.28□□□□□ -0.6
CLSTN3-213ENST00000541953 ABCA13Q86UQ4 5058 aa11.27□□□□□ -0.6
CLSTN3-213ENST00000541953 A0A0A6YYH2 397 aa11.27□□□□□ -0.61
CLSTN3-213ENST00000541953 A6NJ64 397 aa11.27□□□□□ -0.61
CLSTN3-213ENST00000541953 YIF1AO95070 293 aa11.27□□□□□ -0.61
CLSTN3-213ENST00000541953 CA1P00915 261 aaPredicted RBP11.27□□□□□ -0.61
CLSTN3-213ENST00000541953 GIG44P09565 113 aaPredicted RBP11.27□□□□□ -0.61
CLSTN3-213ENST00000541953 HSPA13P48723 471 aa11.27□□□□□ -0.61
CLSTN3-213ENST00000541953 SCAND1P57086 179 aa11.27□□□□□ -0.61
CLSTN3-213ENST00000541953 RBMS2Q15434 407 aaKnown RBP11.27□□□□□ -0.61
CLSTN3-213ENST00000541953 PHLDA2Q53GA4 152 aa11.27□□□□□ -0.61
CLSTN3-213ENST00000541953 DHRS11Q6UWP2 260 aa11.27□□□□□ -0.61
CLSTN3-213ENST00000541953 GATAD1Q8WUU5 269 aa11.27□□□□□ -0.61
CLSTN3-213ENST00000541953 MISP3Q96FF7 219 aa11.27□□□□□ -0.61
CLSTN3-213ENST00000541953 NXF2Q9GZY0 626 aaKnown RBP11.27□□□□□ -0.61
CLSTN3-213ENST00000541953 CYB5BO43169 146 aa11.26□□□□□ -0.61
CLSTN3-213ENST00000541953 MRPS14O60783 128 aaKnown RBP11.26□□□□□ -0.61
CLSTN3-213ENST00000541953 MT-CO2P00403 227 aa11.26□□□□□ -0.61
CLSTN3-213ENST00000541953 IZUMO4Q1ZYL8 232 aa11.26□□□□□ -0.61
CLSTN3-213ENST00000541953 SPINK9Q5DT21 86 aa11.26□□□□□ -0.61
CLSTN3-213ENST00000541953 TCF24Q7RTU0 167 aa11.26□□□□□ -0.61
CLSTN3-213ENST00000541953 Q8NAQ8 132 aa11.26□□□□□ -0.61
CLSTN3-213ENST00000541953 OR1P1Q8NH06 330 aa11.26□□□□□ -0.61
CLSTN3-213ENST00000541953 IFT46Q9NQC8 304 aa11.26□□□□□ -0.61
CLSTN3-213ENST00000541953 APLNQ9ULZ1 77 aa11.26□□□□□ -0.61
CLSTN3-213ENST00000541953 XRCC3O43542 346 aa11.25□□□□□ -0.61
CLSTN3-213ENST00000541953 RBMY1A1P0DJD3 496 aaKnown RBP11.25□□□□□ -0.61
CLSTN3-213ENST00000541953 RBMY1CP0DJD4 496 aa11.25□□□□□ -0.61
CLSTN3-213ENST00000541953 CBX5P45973 191 aa11.25□□□□□ -0.61
CLSTN3-213ENST00000541953 DEFB131AP59861 70 aa11.25□□□□□ -0.61
CLSTN3-213ENST00000541953 RBMY1FQ15415 496 aaKnown RBP11.25□□□□□ -0.61
CLSTN3-213ENST00000541953 TOMM20LQ6UXN7 152 aa11.25□□□□□ -0.61
CLSTN3-213ENST00000541953 FCGR1BQ92637 280 aa11.25□□□□□ -0.61
CLSTN3-213ENST00000541953 PINX1Q96BK5 328 aaKnown RBP11.25□□□□□ -0.61
CLSTN3-213ENST00000541953 SEC22AQ96IW7 307 aa11.25□□□□□ -0.61
CLSTN3-213ENST00000541953 MS4A6AQ9H2W1 248 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms