RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 IFNA4P05014 189 aa14.08□□□□□ -0.16
CLIP1-215ENST00000541108 OR13C7P0DN81 318 aa14.08□□□□□ -0.16
CLIP1-215ENST00000541108 RNASE2P10153 161 aaKnown RBP14.08□□□□□ -0.16
CLIP1-215ENST00000541108 CX3CL1P78423 397 aa14.08□□□□□ -0.16
CLIP1-215ENST00000541108 KRTAP1-1Q07627 177 aa14.08□□□□□ -0.16
CLIP1-215ENST00000541108 SLC38A11Q08AI6 406 aa14.08□□□□□ -0.16
CLIP1-215ENST00000541108 DEFB112Q30KQ8 113 aa14.08□□□□□ -0.16
CLIP1-215ENST00000541108 EIF5AL1Q6IS14 154 aaKnown RBP14.08□□□□□ -0.16
CLIP1-215ENST00000541108 LILRB2Q8N423 598 aa14.08□□□□□ -0.16
CLIP1-215ENST00000541108 ZNF114Q8NC26 417 aa14.08□□□□□ -0.16
CLIP1-215ENST00000541108 PRDM13Q9H4Q3 707 aa14.08□□□□□ -0.16
CLIP1-215ENST00000541108 MOB4Q9Y3A3 225 aa14.08□□□□□ -0.16
CLIP1-215ENST00000541108 FLNAP21333 2647 aaKnown RBP14.08□□□□□ -0.16
CLIP1-215ENST00000541108 A6NDX4 124 aa14.07□□□□□ -0.16
CLIP1-215ENST00000541108 TEX22C9J3V5 150 aa14.07□□□□□ -0.16
CLIP1-215ENST00000541108 PRSS46E5RG02 174 aa14.07□□□□□ -0.16
CLIP1-215ENST00000541108 C16orf82Q7Z2V1 217 aa14.07□□□□□ -0.16
CLIP1-215ENST00000541108 BCL6BQ8N143 479 aaPredicted RBP14.07□□□□□ -0.16
CLIP1-215ENST00000541108 SCARB1Q8WTV0 552 aa14.07□□□□□ -0.16
CLIP1-215ENST00000541108 PARD6GQ9BYG4 376 aaPredicted RBP14.07□□□□□ -0.16
CLIP1-215ENST00000541108 UBQLN2Q9UHD9 624 aa14.07□□□□□ -0.16
CLIP1-215ENST00000541108 M0QZK8 103 aa14.07□□□□□ -0.16
CLIP1-215ENST00000541108 IFNA5P01569 189 aa14.07□□□□□ -0.16
CLIP1-215ENST00000541108 VWC2Q2TAL6 325 aa14.07□□□□□ -0.16
CLIP1-215ENST00000541108 C5orf56Q8N8D9 126 aa14.07□□□□□ -0.16
CLIP1-215ENST00000541108 GINS3Q9BRX5 216 aa14.07□□□□□ -0.16
CLIP1-215ENST00000541108 IER3P46695 156 aa14.06□□□□□ -0.16
CLIP1-215ENST00000541108 OR5R1Q8NH85 324 aa14.06□□□□□ -0.16
CLIP1-215ENST00000541108 ARPC1AQ92747 370 aa14.06□□□□□ -0.16
CLIP1-215ENST00000541108 TMEM147Q9BVK8 224 aa14.06□□□□□ -0.16
CLIP1-215ENST00000541108 IGHV7-81A0A0B4J1V7 117 aa14.05□□□□□ -0.16
CLIP1-215ENST00000541108 DLK1P80370 383 aa14.05□□□□□ -0.16
CLIP1-215ENST00000541108 TUSC1Q2TAM9 212 aa14.05□□□□□ -0.16
CLIP1-215ENST00000541108 PVRIGQ6DKI7 326 aa14.05□□□□□ -0.16
CLIP1-215ENST00000541108 ALKAL2Q6UX46 152 aa14.05□□□□□ -0.16
CLIP1-215ENST00000541108 Q6YL49 198 aa14.05□□□□□ -0.16
CLIP1-215ENST00000541108 RNASEH2CQ8TDP1 164 aaKnown RBP14.05□□□□□ -0.16
CLIP1-215ENST00000541108 SSMEM1Q8WWF3 244 aa14.05□□□□□ -0.16
CLIP1-215ENST00000541108 C22orf15Q8WYQ4 148 aa14.05□□□□□ -0.16
CLIP1-215ENST00000541108 P2RX4Q99571 388 aa14.05□□□□□ -0.16
CLIP1-215ENST00000541108 UQCC1Q9NVA1 299 aa14.05□□□□□ -0.16
CLIP1-215ENST00000541108 AKAP9Q99996 3911 aa14.04□□□□□ -0.16
CLIP1-215ENST00000541108 MYO9AB2RTY4 2548 aa14.04□□□□□ -0.16
CLIP1-215ENST00000541108 FNDC10F2Z333 226 aa14.04□□□□□ -0.16
CLIP1-215ENST00000541108 SEC11BP0C7V7 166 aa14.04□□□□□ -0.16
CLIP1-215ENST00000541108 AREGP15514 252 aa14.04□□□□□ -0.16
CLIP1-215ENST00000541108 TMEM219Q86XT9 240 aa14.04□□□□□ -0.16
CLIP1-215ENST00000541108 OR1P1Q8NH06 330 aa14.04□□□□□ -0.16
CLIP1-215ENST00000541108 CACNG8Q8WXS5 425 aa14.04□□□□□ -0.16
CLIP1-215ENST00000541108 GNPNAT1Q96EK6 184 aaPredicted RBP14.04□□□□□ -0.16
CLIP1-215ENST00000541108 NOTCH2Q04721 2471 aa14.04□□□□□ -0.16
CLIP1-215ENST00000541108 MDFIC2A0A1B0GVS7 189 aa14.04□□□□□ -0.16
CLIP1-215ENST00000541108 CORTO00230 105 aa14.04□□□□□ -0.16
CLIP1-215ENST00000541108 SPP1P10451 314 aa14.04□□□□□ -0.16
CLIP1-215ENST00000541108 SLC25A24Q6NUK1 477 aa14.04□□□□□ -0.16
CLIP1-215ENST00000541108 OR1L6Q8NGR2 347 aa14.04□□□□□ -0.16
CLIP1-215ENST00000541108 SCGB1C1Q8TD33 95 aa14.04□□□□□ -0.16
CLIP1-215ENST00000541108 TMEM160Q9NX00 188 aa14.04□□□□□ -0.16
CLIP1-215ENST00000541108 AMY1AP04745 511 aa14.03□□□□□ -0.16
CLIP1-215ENST00000541108 CRYGCP07315 174 aa14.03□□□□□ -0.16
CLIP1-215ENST00000541108 CTRB1P17538 263 aa14.03□□□□□ -0.16
CLIP1-215ENST00000541108 GPX4P36969 197 aaPredicted RBP14.03□□□□□ -0.16
CLIP1-215ENST00000541108 CTRB2Q6GPI1 263 aa14.03□□□□□ -0.16
CLIP1-215ENST00000541108 HSD17B11Q8NBQ5 300 aa14.03□□□□□ -0.16
CLIP1-215ENST00000541108 TMEM68Q96MH6 324 aa14.03□□□□□ -0.16
CLIP1-215ENST00000541108 WDR61Q9GZS3 305 aaKnown RBP14.03□□□□□ -0.16
CLIP1-215ENST00000541108 NPVFQ9HCQ7 196 aa14.03□□□□□ -0.16
CLIP1-215ENST00000541108 F11RQ9Y624 299 aaKnown RBP14.03□□□□□ -0.16
CLIP1-215ENST00000541108 NAV3Q8IVL0 2385 aa14.02□□□□□ -0.16
CLIP1-215ENST00000541108 BTBD17A6NE02 478 aa14.02□□□□□ -0.16
CLIP1-215ENST00000541108 TSPAN9O75954 239 aa14.02□□□□□ -0.16
CLIP1-215ENST00000541108 MDKP21741 143 aaPredicted RBP14.02□□□□□ -0.16
CLIP1-215ENST00000541108 LY6EQ16553 131 aa14.02□□□□□ -0.16
CLIP1-215ENST00000541108 SGMS2Q8NHU3 365 aa14.02□□□□□ -0.16
CLIP1-215ENST00000541108 ABHD5Q8WTS1 349 aa14.02□□□□□ -0.16
CLIP1-215ENST00000541108 TMED6Q8WW62 240 aa14.02□□□□□ -0.16
CLIP1-215ENST00000541108 FAM103A1Q9BTL3 118 aaKnown RBP14.02□□□□□ -0.16
CLIP1-215ENST00000541108 YAE1D1Q9NRH1 226 aa14.02□□□□□ -0.16
CLIP1-215ENST00000541108 NPIPB5A8MRT5 1133 aa14.01□□□□□ -0.17
CLIP1-215ENST00000541108 MPDU1O75352 247 aa14.01□□□□□ -0.17
CLIP1-215ENST00000541108 FBXO24O75426 580 aa14.01□□□□□ -0.17
CLIP1-215ENST00000541108 IGHV4-59P01825 116 aa14.01□□□□□ -0.17
CLIP1-215ENST00000541108 REG1AP05451 166 aa14.01□□□□□ -0.17
CLIP1-215ENST00000541108 EGR2P11161 476 aaPredicted RBP14.01□□□□□ -0.17
CLIP1-215ENST00000541108 ATP6V0CP27449 155 aa14.01□□□□□ -0.17
CLIP1-215ENST00000541108 NDPQ00604 133 aa14.01□□□□□ -0.17
CLIP1-215ENST00000541108 CD69Q07108 199 aa14.01□□□□□ -0.17
CLIP1-215ENST00000541108 SPNS3Q6ZMD2 512 aa14.01□□□□□ -0.17
CLIP1-215ENST00000541108 TTC9CQ8N5M4 171 aa14.01□□□□□ -0.17
CLIP1-215ENST00000541108 LRRC20Q8TCA0 184 aa14.01□□□□□ -0.17
CLIP1-215ENST00000541108 TAF15Q92804 592 aaKnown RBP eCLIP14.01□□□□□ -0.17
CLIP1-215ENST00000541108 HSPB9Q9BQS6 159 aa14.01□□□□□ -0.17
CLIP1-215ENST00000541108 SLC25A32Q9H2D1 315 aa14.01□□□□□ -0.17
CLIP1-215ENST00000541108 UBE2L5PA0A1B0GUS4 154 aa14.01□□□□□ -0.17
CLIP1-215ENST00000541108 APELAP0DMC3 54 aa14.01□□□□□ -0.17
CLIP1-215ENST00000541108 HNF1AP20823 631 aa14.01□□□□□ -0.17
CLIP1-215ENST00000541108 RAB14P61106 215 aa14.01□□□□□ -0.17
CLIP1-215ENST00000541108 ETFRF1Q6IPR1 90 aa14.01□□□□□ -0.17
CLIP1-215ENST00000541108 RNF141Q8WVD5 230 aa14.01□□□□□ -0.17
CLIP1-215ENST00000541108 ZNF48Q96MX3 618 aaPredicted RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms