RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 CADM3Q8N126 398 aa10.48□□□□□ -0.73
SNHG1-213ENST00000540725 UBAC2Q8NBM4 344 aa10.48□□□□□ -0.73
SNHG1-213ENST00000540725 PRNDQ9UKY0 176 aa10.48□□□□□ -0.73
SNHG1-213ENST00000540725 KIR2DL5BA0A0G2JN68 375 aa10.47□□□□□ -0.73
SNHG1-213ENST00000540725 KIR2DL5BA0A0G2JPC4 375 aa10.47□□□□□ -0.73
SNHG1-213ENST00000540725 NUPR2A6NF83 97 aa10.47□□□□□ -0.73
SNHG1-213ENST00000540725 OR4C46A6NHA9 309 aa10.47□□□□□ -0.73
SNHG1-213ENST00000540725 K7EMT4 169 aa10.47□□□□□ -0.73
SNHG1-213ENST00000540725 GPR31O00270 319 aa10.47□□□□□ -0.73
SNHG1-213ENST00000540725 NAT1P18440 290 aa10.47□□□□□ -0.73
SNHG1-213ENST00000540725 KCTD21Q4G0X4 260 aa10.47□□□□□ -0.73
SNHG1-213ENST00000540725 Q56UQ5 140 aa10.47□□□□□ -0.73
SNHG1-213ENST00000540725 KIR2DL5AQ8N109 375 aa10.47□□□□□ -0.73
SNHG1-213ENST00000540725 STPG3Q8N7X2 389 aa10.47□□□□□ -0.73
SNHG1-213ENST00000540725 SAMD12Q8N8I0 201 aa10.47□□□□□ -0.73
SNHG1-213ENST00000540725 TSPAN14Q8NG11 270 aa10.47□□□□□ -0.73
SNHG1-213ENST00000540725 OR5B3Q8NH48 314 aa10.47□□□□□ -0.73
SNHG1-213ENST00000540725 KIR2DL5BQ8NHK3 375 aa10.47□□□□□ -0.73
SNHG1-213ENST00000540725 TMEM56Q96MV1 263 aa10.47□□□□□ -0.73
SNHG1-213ENST00000540725 FRAS1Q86XX4 4008 aa10.46□□□□□ -0.73
SNHG1-213ENST00000540725 A6NHS1 94 aa10.46□□□□□ -0.74
SNHG1-213ENST00000540725 DBX1A6NMT0 343 aa10.46□□□□□ -0.74
SNHG1-213ENST00000540725 LY6G6CO95867 125 aa10.46□□□□□ -0.74
SNHG1-213ENST00000540725 CTSDP07339 412 aaPredicted RBP10.46□□□□□ -0.74
SNHG1-213ENST00000540725 RPL35AP18077 110 aaKnown RBP10.46□□□□□ -0.74
SNHG1-213ENST00000540725 RPS19P39019 145 aaKnown RBP10.46□□□□□ -0.74
SNHG1-213ENST00000540725 OR6F1Q8NGZ6 308 aa10.46□□□□□ -0.74
SNHG1-213ENST00000540725 RNF183Q96D59 192 aa10.46□□□□□ -0.74
SNHG1-213ENST00000540725 TSC22D3Q99576 134 aa10.46□□□□□ -0.74
SNHG1-213ENST00000540725 TMEM14BQ9NUH8 114 aa10.46□□□□□ -0.74
SNHG1-213ENST00000540725 FKBP11Q9NYL4 201 aa10.46□□□□□ -0.74
SNHG1-213ENST00000540725 KMT2AQ03164 3969 aa10.45□□□□□ -0.74
SNHG1-213ENST00000540725 C15orf61A6NNL5 157 aa10.45□□□□□ -0.74
SNHG1-213ENST00000540725 C15orf62A8K5M9 175 aa10.45□□□□□ -0.74
SNHG1-213ENST00000540725 CTSGP08311 255 aa10.45□□□□□ -0.74
SNHG1-213ENST00000540725 PRSS3P35030 304 aa10.45□□□□□ -0.74
SNHG1-213ENST00000540725 HRH1P35367 487 aa10.45□□□□□ -0.74
SNHG1-213ENST00000540725 PHLDA2Q53GA4 152 aa10.45□□□□□ -0.74
SNHG1-213ENST00000540725 OR1P1Q8NH06 330 aa10.45□□□□□ -0.74
SNHG1-213ENST00000540725 GALNT14Q96FL9 552 aa10.45□□□□□ -0.74
SNHG1-213ENST00000540725 SMPXQ9UHP9 88 aa10.45□□□□□ -0.74
SNHG1-213ENST00000540725 ATF4P18848 351 aaPredicted RBP10.44□□□□□ -0.74
SNHG1-213ENST00000540725 HLA-DMAP28067 261 aa10.44□□□□□ -0.74
SNHG1-213ENST00000540725 LSM3P62310 102 aaKnown RBP10.44□□□□□ -0.74
SNHG1-213ENST00000540725 RELQ04864 619 aaPredicted RBP10.44□□□□□ -0.74
SNHG1-213ENST00000540725 CEMP1Q6PRD7 247 aaPredicted RBP10.44□□□□□ -0.74
SNHG1-213ENST00000540725 LYSMD2Q8IV50 215 aa10.44□□□□□ -0.74
SNHG1-213ENST00000540725 MISP3Q96FF7 219 aa10.44□□□□□ -0.74
SNHG1-213ENST00000540725 ZNF414Q96IQ9 312 aa10.44□□□□□ -0.74
SNHG1-213ENST00000540725 RNF2Q99496 336 aa10.44□□□□□ -0.74
SNHG1-213ENST00000540725 MAP6D1Q9H9H5 199 aa10.44□□□□□ -0.74
SNHG1-213ENST00000540725 FAM212BQ9NTI7 297 aaPredicted RBP10.44□□□□□ -0.74
SNHG1-213ENST00000540725 IGHV7-4-1A0A0J9YVY3 117 aa10.43□□□□□ -0.74
SNHG1-213ENST00000540725 NUPL2O15504 423 aaKnown RBP10.43□□□□□ -0.74
SNHG1-213ENST00000540725 S100GP29377 79 aa10.43□□□□□ -0.74
SNHG1-213ENST00000540725 MFAP4P55083 255 aa10.43□□□□□ -0.74
SNHG1-213ENST00000540725 TSPAN5P62079 268 aa10.43□□□□□ -0.74
SNHG1-213ENST00000540725 APRG1Q8IVJ8 170 aa10.43□□□□□ -0.74
SNHG1-213ENST00000540725 SLC25A46Q96AG3 418 aa10.43□□□□□ -0.74
SNHG1-213ENST00000540725 SEC22AQ96IW7 307 aa10.43□□□□□ -0.74
SNHG1-213ENST00000540725 RHPN1-AS1Q9BWJ2 59 aa10.43□□□□□ -0.74
SNHG1-213ENST00000540725 C6orf62Q9GZU0 229 aaPredicted RBP10.43□□□□□ -0.74
SNHG1-213ENST00000540725 IGHV3-49A0A0A0MS15 119 aa10.42□□□□□ -0.74
SNHG1-213ENST00000540725 I3L2K1 104 aa10.42□□□□□ -0.74
SNHG1-213ENST00000540725 CHEK1O14757 476 aa10.42□□□□□ -0.74
SNHG1-213ENST00000540725 YIF1AO95070 293 aa10.42□□□□□ -0.74
SNHG1-213ENST00000540725 EIF4EP06730 217 aaKnown RBP10.42□□□□□ -0.74
SNHG1-213ENST00000540725 FCGR2BP31994 310 aaPredicted RBP10.42□□□□□ -0.74
SNHG1-213ENST00000540725 LPCAT3Q6P1A2 487 aa10.42□□□□□ -0.74
SNHG1-213ENST00000540725 H2BFWTQ7Z2G1 175 aa10.42□□□□□ -0.74
SNHG1-213ENST00000540725 TBC1D26Q86UD7 250 aa10.42□□□□□ -0.74
SNHG1-213ENST00000540725 TMEM217Q8N7C4 229 aa10.42□□□□□ -0.74
SNHG1-213ENST00000540725 TMEM116Q8NCL8 245 aa10.42□□□□□ -0.74
SNHG1-213ENST00000540725 OR4A16Q8NH70 328 aa10.42□□□□□ -0.74
SNHG1-213ENST00000540725 GPX8Q8TED1 209 aa10.42□□□□□ -0.74
SNHG1-213ENST00000540725 YIPF6Q96EC8 236 aa10.42□□□□□ -0.74
SNHG1-213ENST00000540725 OR10C1Q96KK4 312 aa10.42□□□□□ -0.74
SNHG1-213ENST00000540725 KLK5Q9Y337 293 aaPredicted RBP10.42□□□□□ -0.74
SNHG1-213ENST00000540725 AGRNO00468 2067 aa10.42□□□□□ -0.74
SNHG1-213ENST00000540725 MT-CO2P00403 227 aa10.41□□□□□ -0.74
SNHG1-213ENST00000540725 IGKV1-39P01597 117 aa10.41□□□□□ -0.74
SNHG1-213ENST00000540725 IGKV1D-39P04432 117 aa10.41□□□□□ -0.74
SNHG1-213ENST00000540725 TFPI2P48307 235 aa10.41□□□□□ -0.74
SNHG1-213ENST00000540725 PRCDQ00LT1 54 aa10.41□□□□□ -0.74
SNHG1-213ENST00000540725 ZNF124Q15973 351 aa10.41□□□□□ -0.74
SNHG1-213ENST00000540725 ZNF114Q8NC26 417 aa10.41□□□□□ -0.74
SNHG1-213ENST00000540725 TXN2Q99757 166 aa10.41□□□□□ -0.74
SNHG1-213ENST00000540725 NXF2Q9GZY0 626 aaKnown RBP10.41□□□□□ -0.74
SNHG1-213ENST00000540725 IGKV3-7A0A075B6H7 116 aa10.4□□□□□ -0.74
SNHG1-213ENST00000540725 IGHV3OR16-13A0A075B7E8 117 aa10.4□□□□□ -0.74
SNHG1-213ENST00000540725 IGHV3-74A0A0B4J1X5 117 aa10.4□□□□□ -0.74
SNHG1-213ENST00000540725 IGHV3-48P01763 117 aa10.4□□□□□ -0.74
SNHG1-213ENST00000540725 CMC4P56277 68 aaPredicted RBP10.4□□□□□ -0.74
SNHG1-213ENST00000540725 SNX29P2Q8IUI4 249 aa10.4□□□□□ -0.74
SNHG1-213ENST00000540725 MRGPRFQ96AM1 343 aa10.4□□□□□ -0.74
SNHG1-213ENST00000540725 PINX1Q96BK5 328 aaKnown RBP10.4□□□□□ -0.74
SNHG1-213ENST00000540725 CSTL1Q9H114 145 aa10.4□□□□□ -0.74
SNHG1-213ENST00000540725 SCPEP1Q9HB40 452 aa10.4□□□□□ -0.74
SNHG1-213ENST00000540725 VCX3AQ9NNX9 186 aa10.4□□□□□ -0.74
SNHG1-213ENST00000540725 COMMD3Q9UBI1 195 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms