RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 OR1L8Q8NGR8 309 aa9.73□□□□□ -0.85
CLSTN3-208ENST00000538933 OR10C1Q96KK4 312 aa9.73□□□□□ -0.85
CLSTN3-208ENST00000538933 FYTTD1Q96QD9 318 aaKnown RBP9.73□□□□□ -0.85
CLSTN3-208ENST00000538933 CITED4Q96RK1 184 aa9.73□□□□□ -0.85
CLSTN3-208ENST00000538933 PLSCR3Q9NRY6 295 aa9.73□□□□□ -0.85
CLSTN3-208ENST00000538933 CEBPZOSA8MTT3 80 aa9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 HLA-DRB1P01911 266 aa9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 CRYGBP07316 175 aa9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 TRAPPC2P0DI81 140 aa9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 TRAPPC2BP0DI82 140 aa9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 MYCNOSP40205 109 aa9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 NKX2-1P43699 371 aaPredicted RBP9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 HOXA1P49639 335 aaPredicted RBP9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 PJVKQ0ZLH3 352 aa9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 FXYD3Q14802 87 aa9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 KHDC1LQ5JSQ8 128 aa9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 OR11H7Q8NGC8 314 aa9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 OR5B3Q8NH48 314 aa9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 GRPEL2Q8TAA5 225 aa9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 ARPC1AQ92747 370 aa9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 QTRT1Q9BXR0 403 aaKnown RBP9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 ZNF436Q9C0F3 470 aaPredicted RBP9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 ZFP57Q9NU63 452 aa9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 COA4Q9NYJ1 87 aa9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 FOXA2Q9Y261 457 aaPredicted RBP9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 LSM5Q9Y4Y9 91 aaKnown RBP9.72□□□□□ -0.85
CLSTN3-208ENST00000538933 KIAA1109Q2LD37 5005 aa9.71□□□□□ -0.85
CLSTN3-208ENST00000538933 SH2D7A6NKC9 451 aaPredicted RBP9.71□□□□□ -0.86
CLSTN3-208ENST00000538933 ST8SIA3O43173 380 aa9.71□□□□□ -0.86
CLSTN3-208ENST00000538933 RLN2P04090 185 aa9.71□□□□□ -0.86
CLSTN3-208ENST00000538933 P0C879 139 aa9.71□□□□□ -0.86
CLSTN3-208ENST00000538933 PET100P0DJ07 73 aa9.71□□□□□ -0.86
CLSTN3-208ENST00000538933 CXCL3P19876 107 aa9.71□□□□□ -0.86
CLSTN3-208ENST00000538933 RPL23AP62750 156 aaKnown RBP9.71□□□□□ -0.86
CLSTN3-208ENST00000538933 LRRC37A5PQ49AS3 106 aa9.71□□□□□ -0.86
CLSTN3-208ENST00000538933 Q6ZRM9 215 aa9.71□□□□□ -0.86
CLSTN3-208ENST00000538933 C8orf86Q6ZUL3 223 aa9.71□□□□□ -0.86
CLSTN3-208ENST00000538933 AKAP14Q86UN6 197 aa9.71□□□□□ -0.86
CLSTN3-208ENST00000538933 ZNF429Q86V71 674 aa9.71□□□□□ -0.86
CLSTN3-208ENST00000538933 ASB13Q8WXK3 278 aa9.71□□□□□ -0.86
CLSTN3-208ENST00000538933 NMES1Q9C002 83 aa9.71□□□□□ -0.86
CLSTN3-208ENST00000538933 PLEKHA3Q9HB20 300 aa9.71□□□□□ -0.86
CLSTN3-208ENST00000538933 PARP11Q9NR21 331 aa9.71□□□□□ -0.86
CLSTN3-208ENST00000538933 HECTD4Q9Y4D8 3996 aa9.71□□□□□ -0.86
CLSTN3-208ENST00000538933 A0A1W2PN81 502 aa9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 FAM90A26D6RGX4 464 aa9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 L7N2F9 121 aa9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 FCN1O00602 326 aa9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 CCNKO75909 580 aa9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 IL6RP08887 468 aaPredicted RBP9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 GIPP09681 153 aaPredicted RBP9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 MYOD1P15172 320 aa9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 PVALBP20472 110 aaPredicted RBP9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 CHRNA7P36544 502 aa9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 SPCS3P61009 180 aa9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 HSPE1P61604 102 aaKnown RBP9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 VAMP2P63027 116 aa9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 CX3CL1P78423 397 aa9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 SPINK9Q5DT21 86 aa9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 ZNF562Q6V9R5 426 aa9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 SLC35E3Q7Z769 313 aa9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 OR4D5Q8NGN0 318 aa9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 SRSF12Q8WXF0 261 aaKnown RBP9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 MAGT1Q9H0U3 335 aa9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 HIPK2Q9H2X6 1198 aa9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 EDA2RQ9HAV5 297 aa9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 TMEM14BQ9NUH8 114 aa9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 ZNF257Q9Y2Q1 563 aa9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 DNAH10Q8IVF4 4471 aa9.7□□□□□ -0.86
CLSTN3-208ENST00000538933 TEX50A0A1B0GTY4 177 aa9.69□□□□□ -0.86
CLSTN3-208ENST00000538933 PFDN1O60925 122 aa9.69□□□□□ -0.86
CLSTN3-208ENST00000538933 H2BFSP57053 126 aa9.69□□□□□ -0.86
CLSTN3-208ENST00000538933 RAP2BP61225 183 aa9.69□□□□□ -0.86
CLSTN3-208ENST00000538933 ERHP84090 104 aaKnown RBP9.69□□□□□ -0.86
CLSTN3-208ENST00000538933 PRCDQ00LT1 54 aa9.69□□□□□ -0.86
CLSTN3-208ENST00000538933 TNFRSF9Q07011 255 aa9.69□□□□□ -0.86
CLSTN3-208ENST00000538933 FGL1Q08830 312 aa9.69□□□□□ -0.86
CLSTN3-208ENST00000538933 TMEM267Q0VDI3 215 aaPredicted RBP9.69□□□□□ -0.86
CLSTN3-208ENST00000538933 ECSCRQ19T08 205 aa9.69□□□□□ -0.86
CLSTN3-208ENST00000538933 CXorf66Q5JRM2 361 aaPredicted RBP9.69□□□□□ -0.86
CLSTN3-208ENST00000538933 C10orf55Q5SWW7 151 aa9.69□□□□□ -0.86
CLSTN3-208ENST00000538933 OR52E5Q8NH55 327 aa9.69□□□□□ -0.86
CLSTN3-208ENST00000538933 HSPB9Q9BQS6 159 aa9.69□□□□□ -0.86
CLSTN3-208ENST00000538933 FAM103A1Q9BTL3 118 aaKnown RBP9.69□□□□□ -0.86
CLSTN3-208ENST00000538933 HEYLQ9NQ87 328 aaPredicted RBP9.69□□□□□ -0.86
CLSTN3-208ENST00000538933 IGHV7-81A0A0B4J1V7 117 aa9.68□□□□□ -0.86
CLSTN3-208ENST00000538933 ATP6V0E1O15342 81 aa9.68□□□□□ -0.86
CLSTN3-208ENST00000538933 SYNGR2O43760 224 aa9.68□□□□□ -0.86
CLSTN3-208ENST00000538933 SSSCA1O60232 199 aa9.68□□□□□ -0.86
CLSTN3-208ENST00000538933 PITX3O75364 302 aa9.68□□□□□ -0.86
CLSTN3-208ENST00000538933 APELAP0DMC3 54 aa9.68□□□□□ -0.86
CLSTN3-208ENST00000538933 IAPPP10997 89 aa9.68□□□□□ -0.86
CLSTN3-208ENST00000538933 POLR2GP62487 172 aaKnown RBP eCLIP9.68□□□□□ -0.86
CLSTN3-208ENST00000538933 RAB32Q13637 225 aa9.68□□□□□ -0.86
CLSTN3-208ENST00000538933 UNQ5815/PRO19632Q6UWF5 114 aa9.68□□□□□ -0.86
CLSTN3-208ENST00000538933 ZNF329Q86UD4 541 aa9.68□□□□□ -0.86
CLSTN3-208ENST00000538933 THAP6Q8TBB0 222 aa9.68□□□□□ -0.86
CLSTN3-208ENST00000538933 DTD1Q8TEA8 209 aa9.68□□□□□ -0.86
CLSTN3-208ENST00000538933 PPP1R1CQ8WVI7 109 aa9.68□□□□□ -0.86
CLSTN3-208ENST00000538933 RAX2Q96IS3 184 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms