RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 SIGLEC9Q9Y336 463 aa4.82□□□□□ -1.64
CD44-225ENST00000527326 OR1A2Q9Y585 309 aa4.82□□□□□ -1.64
CD44-225ENST00000527326 LHFPL6Q9Y693 200 aa4.82□□□□□ -1.64
CD44-225ENST00000527326 COL4A2P08572 1712 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 TRBV20OR9-2A0A075B6H5 130 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 TRAV36DV7A0A075B6V5 113 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 FAM90A27PA6NNH2 459 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 E9PLN8 166 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 DUX1O43812 170 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 NEURL1O76050 574 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 MOSP00540 346 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 PPYP01298 95 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 IGHMP01871 453 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 CRYAAP02489 173 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 CELA2AP08217 269 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 NHLRC4P0CG21 123 aaPredicted RBP4.81□□□□□ -1.64
CD44-225ENST00000527326 CCL5P13501 91 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 CPMP14384 443 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 AREGP15514 252 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 CCL1P22362 96 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 PRTN3P24158 256 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 ATP5G3P48201 142 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 FOXG1P55316 489 aaPredicted RBP4.81□□□□□ -1.64
CD44-225ENST00000527326 RPL27P61353 136 aaKnown RBP4.81□□□□□ -1.64
CD44-225ENST00000527326 TTC32Q5I0X7 151 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 PLPP4Q5VZY2 271 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 LYSMD4Q5XG99 296 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 ANKRD37Q7Z713 158 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 PRR22Q8IZ63 422 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 LILRA3Q8N6C8 439 aaPredicted RBP4.81□□□□□ -1.64
CD44-225ENST00000527326 LRRC29Q8WV35 223 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 SOCS4Q8WXH5 440 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 OVCA2Q8WZ82 227 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 DDB2Q92466 427 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 ARPC1AQ92747 370 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 RDH5Q92781 318 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 HOXB13Q92826 284 aaPredicted RBP4.81□□□□□ -1.64
CD44-225ENST00000527326 DUX5Q96PT3 197 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 C20orf78Q9BR46 151 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 NAA38Q9BRA0 125 aaKnown RBP4.81□□□□□ -1.64
CD44-225ENST00000527326 AICDAQ9GZX7 198 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 LIME1Q9H400 295 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 RAB9BQ9NP90 201 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 HIGD1BQ9P298 99 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 PRO0461Q9UI25 63 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 ERRFI1Q9UJM3 462 aaPredicted RBP4.81□□□□□ -1.64
CD44-225ENST00000527326 LOXL2Q9Y4K0 774 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 YTHDF2Q9Y5A9 579 aaKnown RBP4.81□□□□□ -1.64
CD44-225ENST00000527326 HILPDAQ9Y5L2 63 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 ATP23Q9Y6H3 246 aa4.81□□□□□ -1.64
CD44-225ENST00000527326 CPAMD8Q8IZJ3 1885 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 IGHV1-24A0A0C4DH33 117 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 A0A1B0GWB2 263 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 PRSS29PA6NIE9 313 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 C17orf51A8MQB3 221 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 C21orf140B9A014 251 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 C15orf65H3BRN8 121 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 CCDC179H3BU77 68 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 J3KT08 172 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 K7EN84 100 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 EML2O95834 649 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 OPRK1P41145 380 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 ZNF121P58317 390 aaPredicted RBP4.8□□□□□ -1.64
CD44-225ENST00000527326 DLX2Q07687 328 aaPredicted RBP4.8□□□□□ -1.64
CD44-225ENST00000527326 ARL16Q0P5N6 197 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 GAGE2BQ13066 116 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 MFAP5Q13361 173 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 MLF2Q15773 248 aaPredicted RBP4.8□□□□□ -1.64
CD44-225ENST00000527326 GAGE2EQ4V326 116 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 ZNF766Q5HY98 468 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 C17orf99Q6UX52 265 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 TMEM14EPQ6UXP3 125 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 H2BFWTQ7Z2G1 175 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 SH2D6Q7Z4S9 175 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 ATP5L2Q7Z4Y8 100 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 CXorf67Q86X51 503 aaPredicted RBP4.8□□□□□ -1.64
CD44-225ENST00000527326 KIR3DL3Q8N743 410 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 OR5AN1Q8NGI8 311 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 PPDPFLQ8WWR9 84 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 PRELID3AQ96N28 172 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 SPANXDQ9BXN6 97 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 MRPL32Q9BYC8 188 aaKnown RBP4.8□□□□□ -1.64
CD44-225ENST00000527326 UBTD1Q9HAC8 227 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 LYRM4Q9HD34 91 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 TECRQ9NZ01 308 aaKnown RBP4.8□□□□□ -1.64
CD44-225ENST00000527326 ONECUT1Q9UBC0 465 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 GAGE2DQ9UEU5 116 aa4.8□□□□□ -1.64
CD44-225ENST00000527326 COA3Q9Y2R0 106 aaPredicted RBP4.8□□□□□ -1.64
CD44-225ENST00000527326 TMEM131Q92545 1883 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 DOCK3Q8IZD9 2030 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 A0A1B0GX51 115 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 OTOL1A6NHN0 477 aaPredicted RBP4.79□□□□□ -1.64
CD44-225ENST00000527326 C2CD4DB7Z1M9 353 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 IGLL5B9A064 214 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 H3BP45 60 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 STC2O76061 302 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 SLC25A5P05141 298 aaKnown RBP4.79□□□□□ -1.64
CD44-225ENST00000527326 GLI4P10075 376 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 MGST1P10620 155 aaKnown RBP4.79□□□□□ -1.64
CD44-225ENST00000527326 EGR1P18146 543 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms