RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 PRCDQ00LT1 54 aa15.63■□□□□ 0.09
VPS28-206ENST00000526734 SPSB3Q6PJ21 355 aa15.63■□□□□ 0.09
VPS28-206ENST00000526734 PLET1Q6UQ28 207 aa15.63■□□□□ 0.09
VPS28-206ENST00000526734 MCFD2Q8NI22 146 aa15.63■□□□□ 0.09
VPS28-206ENST00000526734 BSCL2Q96G97 398 aaPredicted RBP15.63■□□□□ 0.09
VPS28-206ENST00000526734 TP53RKQ96S44 253 aa15.63■□□□□ 0.09
VPS28-206ENST00000526734 ASCL2Q99929 193 aa15.63■□□□□ 0.09
VPS28-206ENST00000526734 PRRT1Q99946 306 aa15.63■□□□□ 0.09
VPS28-206ENST00000526734 THAP7Q9BT49 309 aaPredicted RBP15.63■□□□□ 0.09
VPS28-206ENST00000526734 ZC4H2Q9NQZ6 224 aa15.63■□□□□ 0.09
VPS28-206ENST00000526734 UCP1P25874 307 aa15.62■□□□□ 0.09
VPS28-206ENST00000526734 ELLP55199 621 aaPredicted RBP15.62■□□□□ 0.09
VPS28-206ENST00000526734 TRIM16LQ309B1 348 aa15.62■□□□□ 0.09
VPS28-206ENST00000526734 DEFB114Q30KQ6 69 aa15.62■□□□□ 0.09
VPS28-206ENST00000526734 ADAMTSL5Q6ZMM2 481 aa15.62■□□□□ 0.09
VPS28-206ENST00000526734 OR2C3Q8N628 320 aa15.62■□□□□ 0.09
VPS28-206ENST00000526734 ZNF114Q8NC26 417 aa15.62■□□□□ 0.09
VPS28-206ENST00000526734 MARCH1Q8TCQ1 289 aa15.62■□□□□ 0.09
VPS28-206ENST00000526734 NXF2Q9GZY0 626 aaKnown RBP15.62■□□□□ 0.09
VPS28-206ENST00000526734 C21orf62Q9NYP8 219 aa15.62■□□□□ 0.09
VPS28-206ENST00000526734 UFC1Q9Y3C8 167 aa15.62■□□□□ 0.09
VPS28-206ENST00000526734 DNAH9Q9NYC9 4486 aa15.62■□□□□ 0.09
VPS28-206ENST00000526734 COL7A1Q02388 2944 aa15.62■□□□□ 0.09
VPS28-206ENST00000526734 ZNF320A2RRD8 509 aa15.61■□□□□ 0.09
VPS28-206ENST00000526734 DBX1A6NMT0 343 aa15.61■□□□□ 0.09
VPS28-206ENST00000526734 TGOLN2O43493 480 aa15.61■□□□□ 0.09
VPS28-206ENST00000526734 CBLN1P23435 193 aa15.61■□□□□ 0.09
VPS28-206ENST00000526734 CD300EQ496F6 205 aaPredicted RBP15.61■□□□□ 0.09
VPS28-206ENST00000526734 SBSPONQ8IVN8 264 aa15.61■□□□□ 0.09
VPS28-206ENST00000526734 PLEKHA3Q9HB20 300 aa15.61■□□□□ 0.09
VPS28-206ENST00000526734 C19orf73Q9NVV2 129 aa15.61■□□□□ 0.09
VPS28-206ENST00000526734 SLC2A8Q9NY64 477 aa15.61■□□□□ 0.09
VPS28-206ENST00000526734 CEPT1Q9Y6K0 416 aa15.61■□□□□ 0.09
VPS28-206ENST00000526734 ANKRD20A5PA0PJZ0 165 aa15.6■□□□□ 0.09
VPS28-206ENST00000526734 TMEM213A2RRL7 107 aa15.6■□□□□ 0.09
VPS28-206ENST00000526734 P0C879 139 aa15.6■□□□□ 0.09
VPS28-206ENST00000526734 ERHP84090 104 aaKnown RBP15.6■□□□□ 0.09
VPS28-206ENST00000526734 FAM219AQ8IW50 185 aa15.6■□□□□ 0.09
VPS28-206ENST00000526734 OR4C16Q8NGL9 310 aa15.6■□□□□ 0.09
VPS28-206ENST00000526734 RRNAD1Q96FB5 475 aaKnown RBP15.6■□□□□ 0.09
VPS28-206ENST00000526734 PDCD10Q9BUL8 212 aa15.6■□□□□ 0.09
VPS28-206ENST00000526734 ZNF436Q9C0F3 470 aaPredicted RBP15.6■□□□□ 0.09
VPS28-206ENST00000526734 ZMAT4Q9H898 229 aa15.6■□□□□ 0.09
VPS28-206ENST00000526734 FABP12A6NFH5 140 aa15.59■□□□□ 0.09
VPS28-206ENST00000526734 INS-IGF2F8WCM5 200 aa15.59■□□□□ 0.09
VPS28-206ENST00000526734 K7EIM0 57 aa15.59■□□□□ 0.09
VPS28-206ENST00000526734 IGKV1-5P01602 117 aa15.59■□□□□ 0.09
VPS28-206ENST00000526734 TNFSF8P32971 234 aa15.59■□□□□ 0.09
VPS28-206ENST00000526734 MFAP2P55001 183 aa15.59■□□□□ 0.09
VPS28-206ENST00000526734 SCARB1Q8WTV0 552 aa15.59■□□□□ 0.09
VPS28-206ENST00000526734 SCGB3A2Q96PL1 93 aa15.59■□□□□ 0.09
VPS28-206ENST00000526734 SOSTQ9BQB4 213 aa15.59■□□□□ 0.09
VPS28-206ENST00000526734 TMEM222Q9H0R3 208 aa15.59■□□□□ 0.09
VPS28-206ENST00000526734 SCP2D1Q9UJQ7 156 aa15.59■□□□□ 0.09
VPS28-206ENST00000526734 TEX13DA0A0J9YY54 714 aaPredicted RBP15.58■□□□□ 0.08
VPS28-206ENST00000526734 IZUMO1RA6ND01 250 aa15.58■□□□□ 0.08
VPS28-206ENST00000526734 DHODHQ02127 395 aa15.58■□□□□ 0.08
VPS28-206ENST00000526734 ZNF57Q68EA5 555 aaPredicted RBP15.58■□□□□ 0.08
VPS28-206ENST00000526734 FAAP20Q6NZ36 180 aa15.58■□□□□ 0.08
VPS28-206ENST00000526734 SLC35G3Q8N808 338 aa15.58■□□□□ 0.08
VPS28-206ENST00000526734 RNASE11Q8TAA1 199 aaKnown RBP15.58■□□□□ 0.08
VPS28-206ENST00000526734 TMEM190Q8WZ59 177 aa15.58■□□□□ 0.08
VPS28-206ENST00000526734 TXN2Q99757 166 aa15.58■□□□□ 0.08
VPS28-206ENST00000526734 MRPL27Q9P0M9 148 aaKnown RBP15.58■□□□□ 0.08
VPS28-206ENST00000526734 TRAV25A0A0B4J276 109 aa15.57■□□□□ 0.08
VPS28-206ENST00000526734 CCDC160A6NGH7 325 aa15.57■□□□□ 0.08
VPS28-206ENST00000526734 ZNF701M0R085 212 aaPredicted RBP15.57■□□□□ 0.08
VPS28-206ENST00000526734 NDUFA4O00483 81 aa15.57■□□□□ 0.08
VPS28-206ENST00000526734 C8orf88P0DMB2 117 aa15.57■□□□□ 0.08
VPS28-206ENST00000526734 FCGR2BP31994 310 aaPredicted RBP15.57■□□□□ 0.08
VPS28-206ENST00000526734 UXS1Q8NBZ7 420 aa15.57■□□□□ 0.08
VPS28-206ENST00000526734 RTBDNQ9BSG5 229 aaPredicted RBP15.57■□□□□ 0.08
VPS28-206ENST00000526734 NAA60Q9H7X0 242 aa15.57■□□□□ 0.08
VPS28-206ENST00000526734 TUBA4BQ9H853 241 aa15.57■□□□□ 0.08
VPS28-206ENST00000526734 GPR132Q9UNW8 380 aa15.57■□□□□ 0.08
VPS28-206ENST00000526734 OR2T8A6NH00 312 aa15.56■□□□□ 0.08
VPS28-206ENST00000526734 ZNF785A8K8V0 405 aa15.56■□□□□ 0.08
VPS28-206ENST00000526734 CDS2O95674 445 aa15.56■□□□□ 0.08
VPS28-206ENST00000526734 IFNA17P01571 189 aa15.56■□□□□ 0.08
VPS28-206ENST00000526734 FAUP35544 74 aaKnown RBP15.56■□□□□ 0.08
VPS28-206ENST00000526734 SNCAP37840 140 aa15.56■□□□□ 0.08
VPS28-206ENST00000526734 MFAP4P55083 255 aa15.56■□□□□ 0.08
VPS28-206ENST00000526734 AP3S2P59780 193 aa15.56■□□□□ 0.08
VPS28-206ENST00000526734 CD81P60033 236 aa15.56■□□□□ 0.08
VPS28-206ENST00000526734 SP6Q3SY56 376 aa15.56■□□□□ 0.08
VPS28-206ENST00000526734 Q56UQ5 140 aa15.56■□□□□ 0.08
VPS28-206ENST00000526734 UNQ9165/PRO28630Q6UXU0 137 aa15.56■□□□□ 0.08
VPS28-206ENST00000526734 OR51S1Q8NGJ8 323 aa15.56■□□□□ 0.08
VPS28-206ENST00000526734 RBPMSQ93062 196 aaKnown RBP15.56■□□□□ 0.08
VPS28-206ENST00000526734 RCHY1Q96PM5 261 aa15.56■□□□□ 0.08
VPS28-206ENST00000526734 NEURL2Q9BR09 285 aa15.56■□□□□ 0.08
VPS28-206ENST00000526734 TM2D3Q9BRN9 247 aa15.56■□□□□ 0.08
VPS28-206ENST00000526734 C5orf66Q9H5L9 145 aa15.56■□□□□ 0.08
VPS28-206ENST00000526734 DAZ1Q9NQZ3 744 aaKnown RBP15.56■□□□□ 0.08
VPS28-206ENST00000526734 CACFD1Q9UGQ2 172 aa15.56■□□□□ 0.08
VPS28-206ENST00000526734 A0A0B4J293 547 aa15.55■□□□□ 0.08
VPS28-206ENST00000526734 CRYM-AS1A6NIL9 109 aa15.55■□□□□ 0.08
VPS28-206ENST00000526734 CORTO00230 105 aa15.55■□□□□ 0.08
VPS28-206ENST00000526734 OR5AC1P0C628 307 aa15.55■□□□□ 0.08
VPS28-206ENST00000526734 S100A5P33763 92 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms