RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 RTN4IP1Q8WWV3 396 aaPredicted RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 CCL17Q92583 94 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 SLC25A46Q96AG3 418 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 BORCS8Q96FH0 119 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 DPH3Q96FX2 82 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 C18orf15Q96N68 181 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 PITX2Q99697 317 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 SEC11CQ9BY50 192 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 DPY30Q9C005 99 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 SLIRPQ9GZT3 109 aaKnown RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 Q9HAA7 133 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 ESM1Q9NQ30 184 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 C21orf62Q9NYP8 219 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 UQCR10Q9UDW1 63 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 MARCOQ9UEW3 520 aaPredicted RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 SLC2A6Q9UGQ3 507 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 FUT9Q9Y231 359 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 KLF13Q9Y2Y9 288 aaPredicted RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 KLK5Q9Y337 293 aaPredicted RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 COQ4Q9Y3A0 265 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 MRPS16Q9Y3D3 137 aaKnown RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 IER3IP1Q9Y5U9 82 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 PXMP4Q9Y6I8 212 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 HECW1Q76N89 1606 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 DISP2A7MBM2 1401 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 TROQ12816 1431 aaPredicted RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 NSD3Q9BZ95 1437 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 INO80Q9ULG1 1556 aaPredicted RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 BCORL1Q5H9F3 1711 aa1.71□□□□□ -2.13
CD44-216ENST00000525293 DOCK3Q8IZD9 2030 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 BCL9LQ86UU0 1499 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 COL6A3P12111 3177 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 TRBV20-1A0A075B6N2 111 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 IGKV6D-21A0A0A0MT36 114 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 TRAV8-2A0A0B4J237 113 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 TRAV8-4A0A0B4J246 113 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 TRAV4A0A0B4J268 109 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 IGKV1D-13A0A0B4J2D9 117 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 LOC100131303A0A0U1RQF7 123 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 FAM168BA1KXE4 195 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 GRIFINA4D1Z8 144 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 TMEM235A6NFC5 223 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 OR4C45A6NMZ5 311 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 CD300LBA8K4G0 201 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 OOSP1A8MZH6 123 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 PIRO00625 290 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 RER1O15258 196 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 GSTZ1O43708 216 aaPredicted RBP1.71□□□□□ -2.14
CD44-216ENST00000525293 CD5LO43866 347 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 LYZL6O75951 148 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 UBL3O95164 117 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 GABARAPO95166 117 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 SFT2D2O95562 160 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 LY6G6DO95868 133 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 CA2P00918 260 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 HLA-DRB1P01911 266 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 H2AFZP0C0S5 128 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 TRGC1P0CF51 173 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 IGKV1-13P0DP09 117 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 BCL2P10415 239 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 SLC25A6P12236 298 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 IFITM1P13164 125 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 HIST1H1DP16402 221 aaKnown RBP1.71□□□□□ -2.14
CD44-216ENST00000525293 ZNF93P35789 620 aaPredicted RBP1.71□□□□□ -2.14
CD44-216ENST00000525293 OPRK1P41145 380 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 GUCA1AP43080 201 aaPredicted RBP1.71□□□□□ -2.14
CD44-216ENST00000525293 VDAC2P45880 294 aaPredicted RBP1.71□□□□□ -2.14
CD44-216ENST00000525293 RPL34P49207 117 aaKnown RBP1.71□□□□□ -2.14
CD44-216ENST00000525293 NUDT2P50583 147 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 CRYBA2P53672 197 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 SLC18A1P54219 525 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 YPEL3P61236 119 aaPredicted RBP1.71□□□□□ -2.14
CD44-216ENST00000525293 RPS24P62847 133 aaKnown RBP1.71□□□□□ -2.14
CD44-216ENST00000525293 FKBP1AP62942 108 aaKnown RBP1.71□□□□□ -2.14
CD44-216ENST00000525293 HLA-DRB3P79483 266 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 LOXL1Q08397 574 aaPredicted RBP1.71□□□□□ -2.14
CD44-216ENST00000525293 FOXF1Q12946 379 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 HES1Q14469 280 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 CD226Q15762 336 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 CENPWQ5EE01 88 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 SPANXN3Q5MJ09 141 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 MUC21Q5SSG8 566 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 ZNF57Q68EA5 555 aaPredicted RBP1.71□□□□□ -2.14
CD44-216ENST00000525293 MRPL54Q6P161 138 aaKnown RBP1.71□□□□□ -2.14
CD44-216ENST00000525293 Q6ZN92 141 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 SHISA6Q6ZSJ9 500 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 SSX8Q7RTT4 187 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 ATP5L2Q7Z4Y8 100 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 TRAPPC6BQ86SZ2 158 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 ATOH7Q8N100 152 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 LINC00311Q8N616 119 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 LINC00337Q8N6G1 96 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 OR4K13Q8NH42 304 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 SGMS2Q8NHU3 365 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 DCANP1Q8TF63 244 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 LRRC29Q8WV35 223 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 ELSPBP1Q96BH3 223 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 ZNF799Q96GE5 643 aa1.71□□□□□ -2.14
CD44-216ENST00000525293 GPX7Q96SL4 187 aaPredicted RBP1.71□□□□□ -2.14
CD44-216ENST00000525293 PRSS27Q9BQR3 290 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms