RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 IGKV3-7A0A075B6H7 116 aa0.92□□□□□ -2.26
CD44-215ENST00000525241 TRAV38-1A0A0B4J264 116 aa0.92□□□□□ -2.26
CD44-215ENST00000525241 KCNK1O00180 336 aa0.92□□□□□ -2.26
CD44-215ENST00000525241 CREBL2O60519 120 aaPredicted RBP0.92□□□□□ -2.26
CD44-215ENST00000525241 DCTN3O75935 186 aa0.92□□□□□ -2.26
CD44-215ENST00000525241 KRT7P08729 469 aa0.92□□□□□ -2.26
CD44-215ENST00000525241 OR5G3P0C626 314 aa0.92□□□□□ -2.26
CD44-215ENST00000525241 FAM228BP0C875 321 aa0.92□□□□□ -2.26
CD44-215ENST00000525241 HOXA6P31267 233 aa0.92□□□□□ -2.26
CD44-215ENST00000525241 CCR7P32248 378 aa0.92□□□□□ -2.26
CD44-215ENST00000525241 SLCO1A2P46721 670 aa0.92□□□□□ -2.26
CD44-215ENST00000525241 ERVS71-1P61550 626 aa0.92□□□□□ -2.26
CD44-215ENST00000525241 RANP62826 216 aaKnown RBP0.92□□□□□ -2.26
CD44-215ENST00000525241 PRB3Q04118 309 aaPredicted RBP0.92□□□□□ -2.26
CD44-215ENST00000525241 ARHGAP11BQ3KRB8 267 aa0.92□□□□□ -2.26
CD44-215ENST00000525241 GID4Q8IVV7 300 aa0.92□□□□□ -2.26
CD44-215ENST00000525241 OR2T4Q8NH00 348 aa0.92□□□□□ -2.26
CD44-215ENST00000525241 SLC35B4Q969S0 331 aa0.92□□□□□ -2.26
CD44-215ENST00000525241 FLT4P35916 1363 aa0.92□□□□□ -2.26
CD44-215ENST00000525241 CAMSAP1Q5T5Y3 1602 aa0.92□□□□□ -2.26
CD44-215ENST00000525241 RANBP2P49792 3224 aaKnown RBP0.92□□□□□ -2.26
CD44-215ENST00000525241 SCN10AQ9Y5Y9 1956 aa0.92□□□□□ -2.26
CD44-215ENST00000525241 DNAH12Q6ZR08 3092 aa0.92□□□□□ -2.26
CD44-215ENST00000525241 SCAF11Q99590 1463 aaKnown RBP0.92□□□□□ -2.26
CD44-215ENST00000525241 HIVEP3Q5T1R4 2406 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 FAM208BQ5VWN6 2430 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 PCF11O94913 1555 aaKnown RBP0.91□□□□□ -2.26
CD44-215ENST00000525241 INTS1Q8N201 2190 aaKnown RBP0.91□□□□□ -2.26
CD44-215ENST00000525241 REV3LO60673 3130 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 WRNQ14191 1432 aaPredicted RBP eCLIP0.91□□□□□ -2.26
CD44-215ENST00000525241 ZANQ9Y493 2812 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 USP9YO00507 2555 aaPredicted RBP0.91□□□□□ -2.26
CD44-215ENST00000525241 NBEAL1Q6ZS30 2694 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 TGIF2-C20orf24A0A0A6YYL0 155 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 IGHV1-69-2A0A0G2JMI3 117 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 A0A1B0GW54 56 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 TCRBP04435 133 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 IFNA16P05015 189 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 CALB1P05937 261 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 S100A6P06703 90 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 TFPTP0C1Z6 253 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 CTXN2P0C2S0 81 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 AKR1C1Q04828 323 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 HIST3H3Q16695 136 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 KRTAP5-10Q6L8G5 202 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 C5orf46Q6UWT4 87 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 DYNAPQ8N1N2 210 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 LRRC25Q8N386 305 aaPredicted RBP0.91□□□□□ -2.26
CD44-215ENST00000525241 SLC22A24Q8N4F4 322 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 DIRAS2Q96HU8 199 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 PRAP1Q96NZ9 151 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 ADAT1Q9BUB4 502 aaKnown RBP0.91□□□□□ -2.26
CD44-215ENST00000525241 MED9Q9NWA0 146 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 UBAP1Q9NZ09 502 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 PXMP4Q9Y6I8 212 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 MUC5BQ9HC84 5762 aaPredicted RBP0.91□□□□□ -2.26
CD44-215ENST00000525241 MTUS2Q5JR59 1369 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 KIF1BO60333 1816 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 NEO1Q92859 1461 aa0.91□□□□□ -2.26
CD44-215ENST00000525241 UBR5O95071 2799 aaPredicted RBP0.91□□□□□ -2.26
CD44-215ENST00000525241 FBN2P35556 2912 aa0.9□□□□□ -2.26
CD44-215ENST00000525241 TMEM269A0A1B0GVZ9 245 aa0.9□□□□□ -2.27
CD44-215ENST00000525241 TRAPPC13A5PLN9 417 aa0.9□□□□□ -2.27
CD44-215ENST00000525241 GOLGA6L19H0YKK7 550 aa0.9□□□□□ -2.27
CD44-215ENST00000525241 KPNA3O00505 521 aaPredicted RBP0.9□□□□□ -2.27
CD44-215ENST00000525241 CHP2O43745 196 aa0.9□□□□□ -2.27
CD44-215ENST00000525241 NSA2O95478 260 aaKnown RBP0.9□□□□□ -2.27
CD44-215ENST00000525241 PPBPP02775 128 aa0.9□□□□□ -2.27
CD44-215ENST00000525241 RPSAP08865 295 aaKnown RBP0.9□□□□□ -2.27
CD44-215ENST00000525241 TCL1AP56279 114 aa0.9□□□□□ -2.27
CD44-215ENST00000525241 HIST1H4AP62805 103 aaKnown RBP0.9□□□□□ -2.27
CD44-215ENST00000525241 CTAG1AP78358 180 aa0.9□□□□□ -2.27
CD44-215ENST00000525241 PMAIP1Q13794 54 aa0.9□□□□□ -2.27
CD44-215ENST00000525241 CDK5R1Q15078 307 aa0.9□□□□□ -2.27
CD44-215ENST00000525241 FAM173BQ6P4H8 233 aa0.9□□□□□ -2.27
CD44-215ENST00000525241 C9orf163Q8N9P6 203 aa0.9□□□□□ -2.27
CD44-215ENST00000525241 C15orf53Q8NAA6 179 aa0.9□□□□□ -2.27
CD44-215ENST00000525241 ERMAPQ96PL5 475 aaPredicted RBP0.9□□□□□ -2.27
CD44-215ENST00000525241 OR8D2Q9GZM6 311 aa0.9□□□□□ -2.27
CD44-215ENST00000525241 CHST6Q9GZX3 395 aa0.9□□□□□ -2.27
CD44-215ENST00000525241 AK3Q9UIJ7 227 aa0.9□□□□□ -2.27
CD44-215ENST00000525241 PRELID1Q9Y255 219 aa0.9□□□□□ -2.27
CD44-215ENST00000525241 HERC1Q15751 4861 aa0.9□□□□□ -2.27
CD44-215ENST00000525241 UBR2Q8IWV8 1755 aa0.9□□□□□ -2.27
CD44-215ENST00000525241 SPTBN5Q9NRC6 3674 aaKnown RBP0.9□□□□□ -2.27
CD44-215ENST00000525241 HMGXB3Q12766 1538 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 ECM29Q5VYK3 1845 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 SBF1O95248 1867 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 GLI3P10071 1580 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 OR51F1A6NGY5 319 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 EEF1E1-BLOC1S5C9J1V9 151 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 M0R036 132 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 ORC5O43913 435 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 LYPLA2O95372 231 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 FGF6P10767 208 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 UCHL3P15374 230 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 HIST1H1TP22492 207 aaPredicted RBP0.89□□□□□ -2.27
CD44-215ENST00000525241 RUNX1Q01196 453 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 PLCXD2Q0VAA5 305 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 ELOBQ15370 118 aa0.89□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms