RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 TNFAIP8L2Q6P589 184 aaPredicted RBP4.79□□□□□ -1.64
LSM1-202ENST00000520286 GKN2Q86XP6 184 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 LRRC18Q8N456 261 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 FAM24BQ8N5W8 94 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 ZDHHC22Q8N966 263 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 TSTD1Q8NFU3 115 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 OR5AK2Q8NH90 309 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 HIST1H2BHQ93079 126 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 CPNE2Q96FN4 548 aaPredicted RBP4.79□□□□□ -1.64
LSM1-202ENST00000520286 UBE2E2Q96LR5 201 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 IP6K3Q96PC2 410 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 HSD17B10Q99714 261 aaKnown RBP4.79□□□□□ -1.64
LSM1-202ENST00000520286 HIST1H2BNQ99877 126 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 HIST1H2BMQ99879 126 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 HINT2Q9BX68 163 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 SNHG12Q9BXW3 62 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 POTEKPQ9BYX7 375 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 NMES1Q9C002 83 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 OR51V1Q9H2C8 321 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 PRO1933Q9H354 126 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 ASCL3Q9NQ33 180 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 OR51B2Q9Y5P1 312 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 COL4A2P08572 1712 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 KIAA1549LQ6ZVL6 1849 aa4.79□□□□□ -1.64
LSM1-202ENST00000520286 J3QLW9 94 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 K7EQS6 105 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 M0QZK8 103 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 TAAR5O14804 337 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 GGCTO75223 188 aaKnown RBP4.78□□□□□ -1.64
LSM1-202ENST00000520286 NSA2O95478 260 aaKnown RBP4.78□□□□□ -1.64
LSM1-202ENST00000520286 PSMB6P28072 239 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 HTR1DP28221 377 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 PYCR1P32322 319 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 SNCAP37840 140 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 AKR1C3P42330 323 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 RPL18AQ02543 176 aaKnown RBP4.78□□□□□ -1.64
LSM1-202ENST00000520286 GLO1Q04760 184 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 RBMY1FQ15415 496 aaKnown RBP4.78□□□□□ -1.64
LSM1-202ENST00000520286 VAMP3Q15836 100 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 ACTBL2Q562R1 376 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 CLEC12AQ5QGZ9 265 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 MED27Q6P2C8 311 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 TMEM205Q6UW68 189 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 FAM151BQ6UXP7 276 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 LINC01551Q86U37 167 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 ZNF664Q8N3J9 261 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 ACBD4Q8NC06 268 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 OR4E2Q8NGC2 313 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 TERB2Q8NHR7 220 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 SFXN5Q8TD22 340 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 DTD1Q8TEA8 209 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 RAB8BQ92930 207 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 FAM104AQ969W3 186 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 PTX4Q96A99 478 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 CAMK2N2Q96S95 79 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 TBX5Q99593 518 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 TMEM208Q9BTX3 173 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 SUCNR1Q9BXA5 334 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 CHRNA10Q9GZZ6 450 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 SLC25A31Q9H0C2 315 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 ARV1Q9H2C2 271 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 OR52D1Q9H346 318 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 SMDT1Q9H4I9 107 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 V9GYY9 64 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 ZNF462Q96JM2 2506 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 LOC400499M0QZD8 3231 aa4.78□□□□□ -1.64
LSM1-202ENST00000520286 LAMA5O15230 3695 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 A0A0D9SEW6 157 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 M0R143 59 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 CDC42EP2O14613 210 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 TP53I11O14683 189 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 TRAPPC6AO75865 159 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 CD3DP04234 171 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 RPN2P04844 631 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 OR5AC1P0C628 307 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 GZMBP10144 247 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 GTF2F2P13984 249 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 ZNF823P16415 610 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 ZNF25P17030 456 aaPredicted RBP4.77□□□□□ -1.65
LSM1-202ENST00000520286 CD70P32970 193 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 GPR4P46093 362 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 GNG10P50151 68 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 TAS2R41P59536 307 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 RPL23P62829 140 aaKnown RBP4.77□□□□□ -1.65
LSM1-202ENST00000520286 RBX1P62877 108 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 SKP1P63208 163 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 IL15RAQ13261 267 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 DEFB116Q30KQ4 102 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 AKIRIN2Q53H80 203 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 ZNF684Q5T5D7 378 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 FBXW9Q5XUX1 488 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 PRSS54Q6PEW0 395 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 AGTRAPQ6RW13 159 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 IGFL2Q6UWQ7 119 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 TPGS1Q6ZTW0 290 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 TRAPPC5Q8IUR0 188 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 OR2T27Q8NH04 317 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 OR10G6Q8NH81 332 aa4.77□□□□□ -1.65
LSM1-202ENST00000520286 SRSF12Q8WXF0 261 aaKnown RBP4.77□□□□□ -1.65
LSM1-202ENST00000520286 SLC35G5Q96KT7 338 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms