RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 ZGRF1Q86YA3 2104 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 VOPP1Q96AW1 172 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 MALRD1Q5VYJ5 2156 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 IGHV3OR16-8A0A075B7F1 116 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 E9PQ18 207 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 AMY1AP04745 511 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 SELLP14151 372 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 UQCRFS1P47985 274 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 LOXL3P58215 753 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 TMEM106BQ9NUM4 274 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 PF4V1P10720 104 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 TMEM78Q5T7P6 136 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 OSR1Q8TAX0 266 aaPredicted RBP10.61□□□□□ -0.71
USP53-209ENST00000514665 ZCCHC14Q8WYQ9 949 aaKnown RBP10.61□□□□□ -0.71
USP53-209ENST00000514665 MRPL20Q9BYC9 149 aaKnown RBP10.61□□□□□ -0.71
USP53-209ENST00000514665 RALYQ9UKM9 306 aaKnown RBP10.61□□□□□ -0.71
USP53-209ENST00000514665 COLCA2A8K830 154 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 PSPNO60542 156 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 MFAP4P55083 255 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 GTF3AQ92664 365 aaKnown RBP10.61□□□□□ -0.71
USP53-209ENST00000514665 UQCR10Q9UDW1 63 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 THSD7BQ9C0I4 1608 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 A0A087WWC5 75 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 HIST1H2BKO60814 126 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 HIST1H2BJP06899 126 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 HIST1H2BOP23527 126 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 HIST1H2BBP33778 126 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 HIST1H2BDP58876 126 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 HIST1H2BCP62807 126 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 LCN2P80188 198 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 HIST2H2BEQ16778 126 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 LBHQ53QV2 105 aaPredicted RBP10.61□□□□□ -0.71
USP53-209ENST00000514665 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.61□□□□□ -0.71
USP53-209ENST00000514665 TCF23Q7RTU1 214 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 HIST1H2BHQ93079 126 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 HIST1H2BNQ99877 126 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 HIST1H2BMQ99879 126 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 C19orf24Q9BVV8 132 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 WNT10AQ9GZT5 417 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 SPRR3Q9UBC9 169 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 MUC6Q6W4X9 2439 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 NLRC5Q86WI3 1866 aa10.61□□□□□ -0.71
USP53-209ENST00000514665 IGHV3-49A0A0A0MS15 119 aa10.6□□□□□ -0.71
USP53-209ENST00000514665 OR4C46A6NHA9 309 aa10.6□□□□□ -0.71
USP53-209ENST00000514665 LILRA1O75019 489 aa10.6□□□□□ -0.71
USP53-209ENST00000514665 BTF3P20290 206 aaKnown RBP10.6□□□□□ -0.71
USP53-209ENST00000514665 SRSF9Q13242 221 aaKnown RBP eCLIP10.6□□□□□ -0.71
USP53-209ENST00000514665 DNM1P46Q6ZS02 220 aa10.6□□□□□ -0.71
USP53-209ENST00000514665 E9PLN8 166 aa10.6□□□□□ -0.71
USP53-209ENST00000514665 GFRA1P56159 465 aa10.6□□□□□ -0.71
USP53-209ENST00000514665 HGFACQ04756 655 aa10.6□□□□□ -0.71
USP53-209ENST00000514665 C1orf162Q8NEQ5 155 aaPredicted RBP10.6□□□□□ -0.71
USP53-209ENST00000514665 MYOZ3Q8TDC0 251 aa10.6□□□□□ -0.71
USP53-209ENST00000514665 WNK1Q9H4A3 2382 aa10.6□□□□□ -0.71
USP53-209ENST00000514665 MUC21A0A0G2JKD1 596 aa10.6□□□□□ -0.71
USP53-209ENST00000514665 MUC21A0A140T8X8 626 aa10.6□□□□□ -0.71
USP53-209ENST00000514665 FOXF2Q12947 444 aa10.6□□□□□ -0.71
USP53-209ENST00000514665 PMCHL1Q16048 86 aa10.6□□□□□ -0.71
USP53-209ENST00000514665 MUC21Q5SSG8 566 aa10.6□□□□□ -0.71
USP53-209ENST00000514665 IGKV3D-15A0A087WSY6 115 aa10.6□□□□□ -0.71
USP53-209ENST00000514665 SAA2-SAA4A0A096LPE2 208 aa10.6□□□□□ -0.71
USP53-209ENST00000514665 FAM106CPP0CH98 169 aa10.6□□□□□ -0.71
USP53-209ENST00000514665 SAA2P0DJI9 122 aaPredicted RBP10.6□□□□□ -0.71
USP53-209ENST00000514665 BSPH1Q075Z2 132 aa10.6□□□□□ -0.71
USP53-209ENST00000514665 Q0VFX4 171 aa10.6□□□□□ -0.71
USP53-209ENST00000514665 MBNL2Q5VZF2 373 aaKnown RBP10.6□□□□□ -0.71
USP53-209ENST00000514665 FAM19A2Q8N3H0 131 aa10.6□□□□□ -0.71
USP53-209ENST00000514665 RBFOX2O43251 390 aaKnown RBP eCLIP10.59□□□□□ -0.71
USP53-209ENST00000514665 GPX4P36969 197 aaPredicted RBP10.59□□□□□ -0.71
USP53-209ENST00000514665 MORN2Q502X0 79 aa10.59□□□□□ -0.71
USP53-209ENST00000514665 REC114Q7Z4M0 266 aa10.59□□□□□ -0.71
USP53-209ENST00000514665 ST6GALNAC3Q8NDV1 305 aa10.59□□□□□ -0.71
USP53-209ENST00000514665 KCNS1Q96KK3 526 aa10.59□□□□□ -0.71
USP53-209ENST00000514665 C16orf92Q96LL3 132 aa10.59□□□□□ -0.71
USP53-209ENST00000514665 MRPL32Q9BYC8 188 aaKnown RBP10.59□□□□□ -0.71
USP53-209ENST00000514665 IL36BQ9NZH7 164 aa10.59□□□□□ -0.71
USP53-209ENST00000514665 MYO18BQ8IUG5 2567 aa10.59□□□□□ -0.71
USP53-209ENST00000514665 LIPFP07098 398 aa10.59□□□□□ -0.71
USP53-209ENST00000514665 ZNF738Q8NE65 137 aa10.59□□□□□ -0.71
USP53-209ENST00000514665 ABHD17AQ96GS6 310 aa10.59□□□□□ -0.71
USP53-209ENST00000514665 SIAH2O43255 324 aa10.59□□□□□ -0.71
USP53-209ENST00000514665 CTAG1AP78358 180 aa10.59□□□□□ -0.71
USP53-209ENST00000514665 C2orf83Q53S99 150 aa10.59□□□□□ -0.71
USP53-209ENST00000514665 RNASE7Q9H1E1 156 aaKnown RBP10.59□□□□□ -0.71
USP53-209ENST00000514665 ANAPC1Q9H1A4 1944 aa10.58□□□□□ -0.72
USP53-209ENST00000514665 OR9G9P0C7N8 305 aa10.58□□□□□ -0.72
USP53-209ENST00000514665 COMPP49747 757 aaPredicted RBP10.58□□□□□ -0.72
USP53-209ENST00000514665 GFI1BQ5VTD9 330 aa10.58□□□□□ -0.72
USP53-209ENST00000514665 ZFP30Q9Y2G7 519 aa10.58□□□□□ -0.72
USP53-209ENST00000514665 IGHV3OR16-10A0A075B7F0 116 aa10.58□□□□□ -0.72
USP53-209ENST00000514665 A6NDN8 102 aa10.58□□□□□ -0.72
USP53-209ENST00000514665 CXCL1P09341 107 aa10.58□□□□□ -0.72
USP53-209ENST00000514665 SAA1P0DJI8 122 aaPredicted RBP10.58□□□□□ -0.72
USP53-209ENST00000514665 FOLR2P14207 255 aa10.58□□□□□ -0.72
USP53-209ENST00000514665 DUTP33316 252 aaKnown RBP10.58□□□□□ -0.72
USP53-209ENST00000514665 RPP25LQ8N5L8 163 aaKnown RBP10.58□□□□□ -0.72
USP53-209ENST00000514665 C14orf144Q96I85 54 aa10.58□□□□□ -0.72
USP53-209ENST00000514665 CSPG4Q6UVK1 2322 aa10.58□□□□□ -0.72
USP53-209ENST00000514665 DPRXA6NFQ7 191 aa10.58□□□□□ -0.72
USP53-209ENST00000514665 IGKV1-5P01602 117 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms