RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 TMEM140Q9NV12 185 aa11.03□□□□□ -0.64
TCOF1-213ENST00000514442 PPIAL4CA0A0B4J2A2 164 aa11.03□□□□□ -0.64
TCOF1-213ENST00000514442 ZNF716A6NP11 495 aa11.03□□□□□ -0.64
TCOF1-213ENST00000514442 IL6RP08887 468 aaPredicted RBP11.03□□□□□ -0.64
TCOF1-213ENST00000514442 PPIAL4GP0DN37 164 aa11.03□□□□□ -0.64
TCOF1-213ENST00000514442 CRYBB3P26998 211 aa11.03□□□□□ -0.64
TCOF1-213ENST00000514442 GCHFRP30047 84 aa11.03□□□□□ -0.64
TCOF1-213ENST00000514442 GLRXP35754 106 aa11.03□□□□□ -0.64
TCOF1-213ENST00000514442 PTGDSP41222 190 aa11.03□□□□□ -0.64
TCOF1-213ENST00000514442 RIGQ13278 110 aa11.03□□□□□ -0.64
TCOF1-213ENST00000514442 DRAM1Q8N682 238 aa11.03□□□□□ -0.64
TCOF1-213ENST00000514442 OR2J3O76001 311 aa11.03□□□□□ -0.64
TCOF1-213ENST00000514442 GRAMD2BQ96HH9 432 aa11.03□□□□□ -0.64
TCOF1-213ENST00000514442 DCTN5Q9BTE1 182 aa11.03□□□□□ -0.64
TCOF1-213ENST00000514442 REPIN1Q9BWE0 567 aaKnown RBP11.03□□□□□ -0.64
TCOF1-213ENST00000514442 ACACAQ13085 2346 aa11.02□□□□□ -0.64
TCOF1-213ENST00000514442 COX6B1P14854 86 aa11.02□□□□□ -0.64
TCOF1-213ENST00000514442 CDKN1AP38936 164 aa11.02□□□□□ -0.64
TCOF1-213ENST00000514442 TCTAP57738 103 aa11.02□□□□□ -0.64
TCOF1-213ENST00000514442 CCDC144NLQ6NUI1 221 aa11.02□□□□□ -0.64
TCOF1-213ENST00000514442 MRPS18CQ9Y3D5 142 aaKnown RBP11.02□□□□□ -0.64
TCOF1-213ENST00000514442 KIF26BQ2KJY2 2108 aa11.02□□□□□ -0.65
TCOF1-213ENST00000514442 IGKV1-9A0A0C4DH69 117 aa11.02□□□□□ -0.65
TCOF1-213ENST00000514442 PLAUP00749 431 aa11.02□□□□□ -0.65
TCOF1-213ENST00000514442 CSRP1P21291 193 aaKnown RBP11.02□□□□□ -0.65
TCOF1-213ENST00000514442 SRSF6Q13247 344 aaKnown RBP11.02□□□□□ -0.65
TCOF1-213ENST00000514442 SCGB1C2P0DMR2 95 aa11.02□□□□□ -0.65
TCOF1-213ENST00000514442 RPL39P5Q59GN2 51 aa11.02□□□□□ -0.65
TCOF1-213ENST00000514442 ACP7Q6ZNF0 438 aa11.02□□□□□ -0.65
TCOF1-213ENST00000514442 PTPRDP23468 1912 aa11.02□□□□□ -0.65
TCOF1-213ENST00000514442 H3BUT2 72 aa11.02□□□□□ -0.65
TCOF1-213ENST00000514442 TFF1P04155 84 aa11.02□□□□□ -0.65
TCOF1-213ENST00000514442 SMIM13P0DJ93 91 aa11.02□□□□□ -0.65
TCOF1-213ENST00000514442 ABHD12Q8N2K0 398 aa11.02□□□□□ -0.65
TCOF1-213ENST00000514442 FAM216BQ8N7L0 139 aa11.02□□□□□ -0.65
TCOF1-213ENST00000514442 OR10AG1Q8NH19 301 aa11.02□□□□□ -0.65
TCOF1-213ENST00000514442 C7orf71A4D174 169 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 LIPFP07098 398 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 HIST1H1AQ02539 215 aaPredicted RBP11.01□□□□□ -0.65
TCOF1-213ENST00000514442 LINC01551Q86U37 167 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 DPF1Q92782 380 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 ST20Q9HBF5 79 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.01□□□□□ -0.65
TCOF1-213ENST00000514442 A1L4Q6 167 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 LILRA1O75019 489 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 NAPSAO96009 420 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 RPL8P62917 257 aaKnown RBP11.01□□□□□ -0.65
TCOF1-213ENST00000514442 TP53BP1Q12888 1972 aaPredicted RBP11.01□□□□□ -0.65
TCOF1-213ENST00000514442 PI4KAP42356 2102 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 IGHV3OR16-10A0A075B7F0 116 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 J3QW42 95 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 REG1AP05451 166 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 SMIM17P0DL12 118 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 GCSHP23434 173 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 OR5A1Q8NGJ0 315 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 EAF1Q96JC9 268 aaPredicted RBP11.01□□□□□ -0.65
TCOF1-213ENST00000514442 JPT1Q9UK76 154 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 A8MWL6 223 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 C12orf77C9JDV5 145 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 HYPMO75409 117 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 CCL1P22362 96 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 GFRA1P56159 465 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 ZIC4Q8N9L1 334 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 PERPQ96FX8 193 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 ANAPC10Q9UM13 185 aa11.01□□□□□ -0.65
TCOF1-213ENST00000514442 ZNF318Q5VUA4 2279 aa11□□□□□ -0.65
TCOF1-213ENST00000514442 GAGE12BA1L429 117 aa11□□□□□ -0.65
TCOF1-213ENST00000514442 PGPEP1LA6NFU8 196 aa11□□□□□ -0.65
TCOF1-213ENST00000514442 TEX43Q6ZNM6 134 aa11□□□□□ -0.65
TCOF1-213ENST00000514442 IL15RAQ13261 267 aa11□□□□□ -0.65
TCOF1-213ENST00000514442 WDR31Q8NA23 367 aa11□□□□□ -0.65
TCOF1-213ENST00000514442 DLL1O00548 723 aa11□□□□□ -0.65
TCOF1-213ENST00000514442 TYMSP04818 313 aa11□□□□□ -0.65
TCOF1-213ENST00000514442 PRSS1P07477 247 aa11□□□□□ -0.65
TCOF1-213ENST00000514442 FREM3P0C091 2139 aa11□□□□□ -0.65
TCOF1-213ENST00000514442 C3orf79P0CE67 100 aa11□□□□□ -0.65
TCOF1-213ENST00000514442 NRN1LQ496H8 165 aa11□□□□□ -0.65
TCOF1-213ENST00000514442 COA6Q5JTJ3 125 aaKnown RBP11□□□□□ -0.65
TCOF1-213ENST00000514442 A0A1B0GUS0 222 aa11□□□□□ -0.65
TCOF1-213ENST00000514442 IZUMO1RA6ND01 250 aa11□□□□□ -0.65
TCOF1-213ENST00000514442 IGHV3-48P01763 117 aa11□□□□□ -0.65
TCOF1-213ENST00000514442 GPX1P07203 203 aa11□□□□□ -0.65
TCOF1-213ENST00000514442 ESDP10768 282 aa11□□□□□ -0.65
TCOF1-213ENST00000514442 Q6ZWC4 215 aa11□□□□□ -0.65
TCOF1-213ENST00000514442 GGNQ86UU5 652 aa11□□□□□ -0.65
TCOF1-213ENST00000514442 EP400Q96L91 3159 aa11□□□□□ -0.65
TCOF1-213ENST00000514442 TICRRQ7Z2Z1 1910 aa10.99□□□□□ -0.65
TCOF1-213ENST00000514442 COL8A1P27658 744 aa10.99□□□□□ -0.65
TCOF1-213ENST00000514442 MC5RP33032 325 aa10.99□□□□□ -0.65
TCOF1-213ENST00000514442 TIMP3P35625 211 aa10.99□□□□□ -0.65
TCOF1-213ENST00000514442 OR13A1Q8NGR1 328 aa10.99□□□□□ -0.65
TCOF1-213ENST00000514442 OCC1Q8TAD7 63 aa10.99□□□□□ -0.65
TCOF1-213ENST00000514442 B9A039 149 aa10.99□□□□□ -0.65
TCOF1-213ENST00000514442 WFDC3Q8IUB2 231 aa10.99□□□□□ -0.65
TCOF1-213ENST00000514442 ZCCHC24Q8N2G6 241 aaKnown RBP10.99□□□□□ -0.65
TCOF1-213ENST00000514442 APOBEC3AP31941 199 aaPredicted RBP10.99□□□□□ -0.65
TCOF1-213ENST00000514442 ATP5J2P56134 94 aa10.99□□□□□ -0.65
TCOF1-213ENST00000514442 FOXF2Q12947 444 aa10.99□□□□□ -0.65
TCOF1-213ENST00000514442 SLC35E4Q6ICL7 350 aa10.99□□□□□ -0.65
TCOF1-213ENST00000514442 SSBP3Q9BWW4 388 aaPredicted RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 145 ms