RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 LY6G6EA0A0G2JKS1 128 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 GNG7O60262 68 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 FAM87AP0C7U9 286 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 SAA2P0DJI9 122 aaPredicted RBP7□□□□□ -1.29
LIMCH1-216ENST00000512820 C9orf106Q8NAJ2 232 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 KCNS1Q96KK3 526 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 METRNQ9UJH8 293 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 U3KQA8 63 aa7□□□□□ -1.29
LIMCH1-216ENST00000512820 TMSB15BA0A087X1C1 80 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 FAM157AC9JC47 383 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 KRTCAP3Q53RY4 240 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 SPATA31B1PQ5VZV4 182 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 FAM216BQ8N7L0 139 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 BEND2Q8NDZ0 799 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 GRAMD2BQ96HH9 432 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 MRPL37Q9BZE1 423 aaKnown RBP6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 A0A1W2PRD5 423 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 A0A1W2PRF3 423 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 A0A1W2PRM7 423 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 FAM90A9PA6NNJ1 464 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 C1orf194Q5T5A4 169 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 FAM90A1Q86YD7 464 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 OR8A1Q8NGG7 326 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 OR52E5Q8NH55 327 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 C2orf88Q9BSF0 95 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 ELOVL5Q9NYP7 299 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 ICE1Q9Y2F5 2266 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 C15orf62A8K5M9 175 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 CLEC3BP05452 202 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 ZNF883P0CG24 379 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 CA7P43166 264 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 RPL11P62913 178 aaKnown RBP6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 TMEM30BQ3MIR4 351 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 LINC00305Q7Z4B0 112 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 BPIFA4PQ86YQ2 179 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 OR8B2Q96RD0 313 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 MGST2Q99735 147 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 KIAA1549LQ6ZVL6 1849 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 GVINP1Q7Z2Y8 2422 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 MOSP00540 346 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 BTF3P20290 206 aaKnown RBP6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 FOXA3P55318 350 aaPredicted RBP6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 TBR1Q16650 682 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 OSR1Q8TAX0 266 aaPredicted RBP6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 COQ2Q96H96 371 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 DIRC2Q96SL1 478 aa6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 SEPSECSQ9HD40 501 aaKnown RBP6.99□□□□□ -1.29
LIMCH1-216ENST00000512820 TRAV3A0A0B4J244 114 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 CORTO00230 105 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 PEX7O00628 323 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 IGKV1D-33P01593 117 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 IGKV1-33P01594 117 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 NUTF2P61970 127 aaKnown RBP6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 PEAR1Q5VY43 1037 aaPredicted RBP6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 DMRTA1Q5VZB9 504 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 HAPLN4Q86UW8 402 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 LOXL4Q96JB6 756 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 OSTCQ9NRP0 149 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 MBNL3Q9NUK0 354 aaKnown RBP6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 COLQQ9Y215 455 aaPredicted RBP6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 NCOR1O75376 2440 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 IZUMO1RA6ND01 250 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 UPK2O00526 184 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 RELBQ01201 579 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 MMDQ15546 238 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 RAB1CQ92928 201 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 THYN1Q9P016 225 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 A8MWP6 167 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 PPIHO43447 177 aaKnown RBP6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 CD33P20138 364 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 COTL1Q14019 142 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 TIMM23BQ5SRD1 257 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 PRR7Q8TB68 274 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 GNB1LQ9BYB4 327 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 CHODLQ9H9P2 273 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 THADAQ6YHU6 1953 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 ZNF503-AS2A6NEH8 195 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 SP9P0CG40 484 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 CEACAM3P40198 252 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 GPR6P46095 362 aaPredicted RBP6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 HBBP68871 147 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 CDPF1Q6NVV7 123 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 Q6ZSR3 168 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 TMEM186Q96B77 213 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 SCNM1Q9BWG6 230 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 ZNF71Q9NQZ8 489 aaPredicted RBP6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 SPTA1P02549 2419 aa6.98□□□□□ -1.29
LIMCH1-216ENST00000512820 LOC389332A0A1B0GUA5 103 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 CD3EP07766 207 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 SLC25A34Q6PIV7 304 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 CD177Q8N6Q3 437 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 OR8B3Q8NGG8 313 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 CACNG8Q8WXS5 425 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 FOXH1O75593 365 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 TNFSF13O75888 250 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 SAA1P0DJI8 122 aaPredicted RBP6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 PPOXP50336 477 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 DTX1Q86Y01 620 aa6.97□□□□□ -1.29
LIMCH1-216ENST00000512820 MRPL20Q9BYC9 149 aaKnown RBP6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms