RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 PRR20BP86481 221 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 PRR20AP86496 221 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 GUSBP1Q15486 140 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 TPTE2P1Q5T6R2 138 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 MBNL2Q5VZF2 373 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 BHLHA15Q7RTS1 189 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 LINC00479Q96M42 142 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 CCL13Q99616 98 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 GNB4Q9HAV0 340 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 DCAF16Q9NXF7 216 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 DSCAMO60469 2012 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 TRGV10A0A0A0MS01 117 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 SRRM4A7MD48 611 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 PRR33A8MZF0 331 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 IGLV1-44P01699 117 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 IGHG3P01860 377 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 SP9P0CG40 484 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 PMCHP20382 165 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 TIGITQ495A1 244 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 OR10W1Q8NGF6 305 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 SARAFQ96BY9 339 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 STARD4Q96DR4 205 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 PLXNB1O43157 2135 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 WT1P19544 449 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 PAFAH1B2P68402 229 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 TMEM14BQ9NUH8 114 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 IL19Q9UHD0 177 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 TRAV5A0A0B4J249 113 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 RAB4AP20338 218 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 FAM216BQ8N7L0 139 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 SIGLECL1Q8N7X8 197 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 SSBP3Q9BWW4 388 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 SLC45A2Q9UMX9 530 aa7.58□□□□□ -1.2
LIMCH1-215ENST00000512632 TRGV8A0A0C4DH27 118 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 TNFSF13O75888 250 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 AMTP48728 403 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 RANP62826 216 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 MZT1Q08AG7 82 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 PRR31Q5SQ13 230 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 C11orf52Q96A22 123 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 ZNF503Q96F45 646 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 VAMP8Q9BV40 100 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 PLSCR4Q9NRQ2 329 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 FBXL7Q9UJT9 491 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 PTPRBP23467 1997 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 KBTBD11-OT1A0A1B0GTJ5 212 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 ZNF253O75346 499 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 CGB3P0DN86 165 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 CGB7P0DN87 165 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 SLC35D1Q9NTN3 355 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 DKK4Q9UBT3 224 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 FOXA2Q9Y261 457 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 SLC25A15Q9Y619 301 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 GGTLC3B5MD39 225 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 C9JCJ5 164 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 RAB7AP51149 207 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 RPRMLQ8N4K4 120 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 DEFB123Q8N688 67 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 C1orf162Q8NEQ5 155 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 MGAQ8IWI9 3026 aa7.57□□□□□ -1.2
LIMCH1-215ENST00000512632 AREGP15514 252 aa7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 KIR2DS2P43631 304 aa7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 REG1BP48304 166 aa7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 KLF3P57682 345 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 MORN5Q5VZ52 161 aa7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 FAM19A2Q8N3H0 131 aa7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 NEUROG1Q92886 237 aa7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 RCHY1Q96PM5 261 aa7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 TECRQ9NZ01 308 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 RIF1Q5UIP0 2472 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 NTF3P20783 257 aa7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 CR1LQ2VPA4 569 aa7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 OR2T6Q8NHC8 308 aa7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 TBL2Q9Y4P3 447 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 SRIP30626 198 aa7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 FAM168AQ92567 244 aa7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 TMEM167BQ9NRX6 74 aa7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 TFPI2P48307 235 aa7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 CORO2AQ92828 525 aa7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 MIEN1Q9BRT3 115 aa7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 PPIAL4AQ9Y536 164 aa7.56□□□□□ -1.2
LIMCH1-215ENST00000512632 NAV3Q8IVL0 2385 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 TRAV17A0A0B4J275 112 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 TEX50A0A1B0GTY4 177 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 GPX1P07203 203 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 CT45A6P0DMU7 189 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 CT45A5P0DMU8 189 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 CT45A7P0DMV0 189 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 TMEM183BQ1AE95 376 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 SEM1Q6ZVN7 128 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 ZCCHC24Q8N2G6 241 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 SGK494Q96LW2 274 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 TRAV34A0A0B4J273 112 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 DIRC3C9JPN6 131 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 UPK2O00526 184 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 BRS3P32247 399 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 TEX43Q6ZNM6 134 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 LHFPL4Q7Z7J7 247 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 NRN1Q9NPD7 142 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 TUBG2Q9NRH3 451 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms