RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 GALR1P47211 349 aa9.77□□□□□ -0.85
NUP54-202ENST00000502850 CDX1P47902 265 aaPredicted RBP9.77□□□□□ -0.85
NUP54-202ENST00000502850 SUB1P53999 127 aaKnown RBP eCLIP9.77□□□□□ -0.85
NUP54-202ENST00000502850 RPL8P62917 257 aaKnown RBP9.77□□□□□ -0.85
NUP54-202ENST00000502850 FBXL19-AS1Q494R0 122 aa9.77□□□□□ -0.85
NUP54-202ENST00000502850 UTF1Q5T230 341 aa9.77□□□□□ -0.85
NUP54-202ENST00000502850 OR9G1Q8NH87 305 aa9.77□□□□□ -0.85
NUP54-202ENST00000502850 CACNG8Q8WXS5 425 aa9.77□□□□□ -0.85
NUP54-202ENST00000502850 UHRF2Q96PU4 802 aa9.77□□□□□ -0.85
NUP54-202ENST00000502850 IMMP2LQ96T52 175 aa9.77□□□□□ -0.85
NUP54-202ENST00000502850 RNF2Q99496 336 aa9.77□□□□□ -0.85
NUP54-202ENST00000502850 PYGO2Q9BRQ0 406 aa9.77□□□□□ -0.85
NUP54-202ENST00000502850 SRD5A3Q9H8P0 318 aa9.77□□□□□ -0.85
NUP54-202ENST00000502850 PATZ1Q9HBE1 687 aaKnown RBP9.77□□□□□ -0.85
NUP54-202ENST00000502850 WASHC3Q9Y3C0 194 aa9.77□□□□□ -0.85
NUP54-202ENST00000502850 ZGRF1Q86YA3 2104 aa9.76□□□□□ -0.85
NUP54-202ENST00000502850 IGHV1-69-2A0A0G2JMI3 117 aa9.76□□□□□ -0.85
NUP54-202ENST00000502850 E7EQL1 145 aa9.76□□□□□ -0.85
NUP54-202ENST00000502850 PPP5D1E7EU14 171 aa9.76□□□□□ -0.85
NUP54-202ENST00000502850 DVL1O14640 695 aa9.76□□□□□ -0.85
NUP54-202ENST00000502850 IGKV1-16P04430 117 aa9.76□□□□□ -0.85
NUP54-202ENST00000502850 CCL3L1P16619 93 aa9.76□□□□□ -0.85
NUP54-202ENST00000502850 FAM3BP58499 235 aaPredicted RBP9.76□□□□□ -0.85
NUP54-202ENST00000502850 TAS2R45P59539 299 aa9.76□□□□□ -0.85
NUP54-202ENST00000502850 PRR20EP86478 221 aa9.76□□□□□ -0.85
NUP54-202ENST00000502850 PRR20CP86479 221 aa9.76□□□□□ -0.85
NUP54-202ENST00000502850 PRR20DP86480 221 aa9.76□□□□□ -0.85
NUP54-202ENST00000502850 PRR20BP86481 221 aa9.76□□□□□ -0.85
NUP54-202ENST00000502850 PRR20AP86496 221 aa9.76□□□□□ -0.85
NUP54-202ENST00000502850 VMA21Q3ZAQ7 101 aa9.76□□□□□ -0.85
NUP54-202ENST00000502850 TMEM155Q4W5P6 130 aa9.76□□□□□ -0.85
NUP54-202ENST00000502850 DMRTC2Q8IXT2 367 aaPredicted RBP9.76□□□□□ -0.85
NUP54-202ENST00000502850 TMEM167AQ8TBQ9 72 aa9.76□□□□□ -0.85
NUP54-202ENST00000502850 GATAD1Q8WUU5 269 aa9.76□□□□□ -0.85
NUP54-202ENST00000502850 TMEM167BQ9NRX6 74 aa9.76□□□□□ -0.85
NUP54-202ENST00000502850 SLC45A2Q9UMX9 530 aa9.76□□□□□ -0.85
NUP54-202ENST00000502850 FLNBO75369 2602 aaKnown RBP9.76□□□□□ -0.85
NUP54-202ENST00000502850 YLPM1P49750 1951 aaKnown RBP9.76□□□□□ -0.85
NUP54-202ENST00000502850 HIST1H2BKO60814 126 aa9.75□□□□□ -0.85
NUP54-202ENST00000502850 TRGC2P03986 189 aa9.75□□□□□ -0.85
NUP54-202ENST00000502850 HIST1H2BJP06899 126 aa9.75□□□□□ -0.85
NUP54-202ENST00000502850 PFN1P07737 140 aaKnown RBP9.75□□□□□ -0.85
NUP54-202ENST00000502850 HIST1H2BOP23527 126 aa9.75□□□□□ -0.85
NUP54-202ENST00000502850 LOXP28300 417 aaPredicted RBP9.75□□□□□ -0.85
NUP54-202ENST00000502850 GCHFRP30047 84 aa9.75□□□□□ -0.85
NUP54-202ENST00000502850 HIST1H2BBP33778 126 aa9.75□□□□□ -0.85
NUP54-202ENST00000502850 HIST1H2BDP58876 126 aa9.75□□□□□ -0.85
NUP54-202ENST00000502850 HIST1H2BCP62807 126 aa9.75□□□□□ -0.85
NUP54-202ENST00000502850 HIST2H2BEQ16778 126 aa9.75□□□□□ -0.85
NUP54-202ENST00000502850 HLA-DRB5Q30154 266 aa9.75□□□□□ -0.85
NUP54-202ENST00000502850 GCSAMLQ5JQS6 135 aa9.75□□□□□ -0.85
NUP54-202ENST00000502850 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.75□□□□□ -0.85
NUP54-202ENST00000502850 TGIF2LXQ8IUE1 241 aa9.75□□□□□ -0.85
NUP54-202ENST00000502850 RNASEH2CQ8TDP1 164 aaKnown RBP9.75□□□□□ -0.85
NUP54-202ENST00000502850 ABHD5Q8WTS1 349 aa9.75□□□□□ -0.85
NUP54-202ENST00000502850 SSMEM1Q8WWF3 244 aa9.75□□□□□ -0.85
NUP54-202ENST00000502850 HIST1H2BHQ93079 126 aa9.75□□□□□ -0.85
NUP54-202ENST00000502850 HIST1H2BNQ99877 126 aa9.75□□□□□ -0.85
NUP54-202ENST00000502850 HIST1H2BMQ99879 126 aa9.75□□□□□ -0.85
NUP54-202ENST00000502850 NABP2Q9BQ15 211 aa9.75□□□□□ -0.85
NUP54-202ENST00000502850 NDUFA4L2Q9NRX3 87 aa9.75□□□□□ -0.85
NUP54-202ENST00000502850 NBASA2RRP1 2371 aa9.75□□□□□ -0.85
NUP54-202ENST00000502850 PCP4L1A6NKN8 68 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 SRRM4A7MD48 611 aaKnown RBP9.74□□□□□ -0.85
NUP54-202ENST00000502850 RBP4P02753 201 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 RNASE2P10153 161 aaKnown RBP9.74□□□□□ -0.85
NUP54-202ENST00000502850 AREGP15514 252 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 CHRNB4P30926 498 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 NDUFA6P56556 154 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 UBE2G2P60604 165 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 GNB1P62873 340 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 LCN2P80188 198 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 CD69Q07108 199 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 PRR30Q53SZ7 412 aaPredicted RBP9.74□□□□□ -0.85
NUP54-202ENST00000502850 LINC01551Q86U37 167 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 OR51G1Q8NGK1 321 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 C11orf52Q96A22 123 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 MRPL32Q9BYC8 188 aaKnown RBP9.74□□□□□ -0.85
NUP54-202ENST00000502850 ASH1LQ9NR48 2969 aaKnown RBP9.74□□□□□ -0.85
NUP54-202ENST00000502850 TECRQ9NZ01 308 aaKnown RBP9.74□□□□□ -0.85
NUP54-202ENST00000502850 FUT9Q9Y231 359 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 LY96Q9Y6Y9 160 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 MDFIC2A0A1B0GVS7 189 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.74□□□□□ -0.85
NUP54-202ENST00000502850 GGCTO75223 188 aaKnown RBP9.74□□□□□ -0.85
NUP54-202ENST00000502850 TYMSP04818 313 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 IGFBP2P18065 325 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 CA7P43166 264 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 LGALS7P47929 136 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 ATP5G3P48201 142 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 DLX6P56179 175 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 PQLC2Q6ZP29 291 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 ZCCHC24Q8N2G6 241 aaKnown RBP9.74□□□□□ -0.85
NUP54-202ENST00000502850 OR2T10Q8NGZ9 312 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 C1orf159Q96HA4 380 aa9.74□□□□□ -0.85
NUP54-202ENST00000502850 GAR1Q9NY12 217 aaKnown RBP9.74□□□□□ -0.85
NUP54-202ENST00000502850 SETXQ7Z333 2677 aaKnown RBP9.73□□□□□ -0.85
NUP54-202ENST00000502850 C9JCJ5 164 aa9.73□□□□□ -0.85
NUP54-202ENST00000502850 NDUFB4O95168 129 aa9.73□□□□□ -0.85
NUP54-202ENST00000502850 TRGC1P0CF51 173 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms