RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 OR4A47Q6IF82 309 aa13.2□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 Q6ZS92 163 aa13.2□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 IMMP2LQ96T52 175 aa13.2□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 TXNDC17Q9BRA2 123 aa13.2□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 TMEM14BQ9NUH8 114 aa13.2□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 KMT2BQ9UMN6 2715 aaPredicted RBP13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 RAI1Q7Z5J4 1906 aaPredicted RBP13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 A0A1W2PN81 502 aa13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 PRB1P04280 392 aa13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 GLRXP35754 106 aa13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 RAB7AP51149 207 aa13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 KLF3P57682 345 aaPredicted RBP13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 FOXL1Q12952 345 aa13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 FAM222BQ8WU58 562 aa13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 FOXA2Q9Y261 457 aaPredicted RBP13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 ZNF462Q96JM2 2506 aa13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 UTP20O75691 2785 aaKnown RBP13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 IGLV3-9A0A075B6K5 115 aa13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 KBTBD11-OT1A0A1B0GTJ5 212 aa13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 HSBP1L1C9JCN9 74 aa13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 MYOD1P15172 320 aa13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 HSPE1P61604 102 aaKnown RBP13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 VHLLQ6RSH7 139 aa13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 IGFL3Q6UXB1 125 aa13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 TCF23Q7RTU1 214 aa13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 ZNF439Q8NDP4 499 aa13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 SFRP2Q96HF1 295 aa13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 SEPSECSQ9HD40 501 aaKnown RBP13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 IDI2-AS1Q9NZ38 188 aa13.19□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 A0A0U1RQK1 487 aa13.18□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 ZNF320A2RRD8 509 aa13.18□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 GCHFRP30047 84 aa13.18□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 EFNB3Q15768 340 aa13.18□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 TIMM23BQ5SRD1 257 aa13.18□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 RPRMLQ8N4K4 120 aa13.18□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.18□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 OCC1Q8TAD7 63 aa13.18□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 ELOVL5Q9NYP7 299 aa13.18□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 ZNF705GA8MUZ8 300 aaPredicted RBP13.17□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 CA2P00918 260 aa13.17□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 NPY1RP25929 384 aa13.17□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 THBS3P49746 956 aa13.17□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 CNN1P51911 297 aaKnown RBP13.17□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 STPG3Q8N7X2 389 aa13.17□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 CBLN4Q9NTU7 201 aa13.17□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 TMEM8BA6NDV4 472 aa13.17□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 FOXH1O75593 365 aa13.17□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 GATA4P43694 442 aa13.17□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 C1orf194Q5T5A4 169 aa13.17□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 TEPPQ6URK8 271 aa13.17□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 SGMS2Q8NHU3 365 aa13.17□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 WFIKKN1Q96NZ8 548 aa13.17□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 SH3BGRL2Q9UJC5 107 aa13.17□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 FAM215AQ9Y5M1 114 aa13.17□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 SIAH2O43255 324 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 RPL29P47914 159 aaKnown RBP13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 POU2AF1Q16633 256 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 IQCJQ1A5X6 159 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 STUMQ69YW2 141 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 SNRNP40Q96DI7 357 aaKnown RBP13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 LPAR2Q9HBW0 351 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 TRAPPC1Q9Y5R8 145 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 MYO18BQ8IUG5 2567 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 KIR2DL5BA0A0G2JN68 375 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 KIR2DL5BA0A0G2JPC4 375 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 MDFIC2A0A1B0GVS7 189 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 LINC00869P0C866 280 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 TIMP3P35625 211 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 PRR20EP86478 221 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 PRR20CP86479 221 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 PRR20DP86480 221 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 PRR20BP86481 221 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 PRR20AP86496 221 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 TEX38Q6PEX7 206 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 KIR2DL5AQ8N109 375 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 LYG1Q8N1E2 194 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 GBGT1Q8N5D6 347 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 NEUROG1Q92886 237 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 GAFA1Q96PS6 74 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 GCM1Q9NP62 436 aa13.16□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 A6NNC1 897 aa13.15□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 TCF21O43680 179 aa13.15□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 MMP23AO75900 390 aa13.15□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 IGFBP2P18065 325 aa13.15□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 C3orf36Q3SXR2 165 aa13.15□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 RNASE8Q8TDE3 154 aaKnown RBP13.15□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 BBC3Q96PG8 261 aaPredicted RBP13.15□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 RNF7Q9UBF6 113 aa13.15□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 ZFP30Q9Y2G7 519 aa13.15□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 YLPM1P49750 1951 aaKnown RBP13.15□□□□□ -0.3
MSH5-SAPCD1-208ENST00000498473 K7EN84 100 aa13.15□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 K7EP13 123 aa13.15□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 RHOBP62745 196 aa13.15□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 ETFRF1Q6IPR1 90 aa13.15□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 C22orf34Q6ZV56 151 aa13.15□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 SMIM15Q7Z3B0 74 aa13.15□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 C11orf52Q96A22 123 aa13.15□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 TMEM18Q96B42 140 aa13.15□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 BTF3L4Q96K17 158 aa13.15□□□□□ -0.31
MSH5-SAPCD1-208ENST00000498473 CHODLQ9H9P2 273 aa13.15□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms