RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 A0A087X002 238 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP2.87□□□□□ -1.95
USP54-217ENST00000498213 TRBV9A0A0B4J1U6 114 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 PNMA8CA0A1B0GUJ8 204 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 PGPEP1LA6NFU8 196 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 A6NIN4 97 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 C11orf94C9JXX5 98 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 G3V318 75 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 H0YJW9 148 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 J3QLW9 94 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 SCGNO76038 276 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 NAPSAO96009 420 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 TRGV3P03979 118 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 MAS1P04201 325 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 CTXN2P0C2S0 81 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 OR9G9P0C7N8 305 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 SAA2P0DJI9 122 aaPredicted RBP2.87□□□□□ -1.95
USP54-217ENST00000498213 MGMTP16455 207 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 CD36P16671 472 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 ZNF19P17023 458 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 SRMP19623 302 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 KIR2DS2P43631 304 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 REG1BP48304 166 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 UBE2KP61086 200 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 LSM3P62310 102 aaKnown RBP2.87□□□□□ -1.95
USP54-217ENST00000498213 RPS25P62851 125 aaKnown RBP2.87□□□□□ -1.95
USP54-217ENST00000498213 DIAPH2-AS1Q14236 149 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 INSL4Q14641 139 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 FXYD3Q14802 87 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 P2RY14Q15391 338 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 SPHARQ15513 63 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 RTL8BQ17RB0 113 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 ODF4Q2M2E3 257 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 PIGYQ3MUY2 71 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 VMA21Q3ZAQ7 101 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 FAM106AQ4KMX7 169 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 SLC22A6Q4U2R8 563 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 Q5VSD8 79 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 LIPKQ5VXJ0 399 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 DMKNQ6E0U4 476 aaPredicted RBP2.87□□□□□ -1.95
USP54-217ENST00000498213 MZT2BQ6NZ67 158 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 ZNF880Q6PDB4 577 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 FAM131AQ6UXB0 335 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 BAIAP2L2Q6UXY1 529 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 IL34Q6ZMJ4 242 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 Q6ZS49 121 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 SLC38A6Q8IZM9 456 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 OR51A4Q8NGJ6 313 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 FCGR1BQ92637 280 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 BORCS5Q969J3 196 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 DGCR14Q96DF8 476 aaKnown RBP2.87□□□□□ -1.95
USP54-217ENST00000498213 CXorf58Q96LI9 332 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 MGLLQ99685 303 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 SPAG8Q99932 426 aaPredicted RBP2.87□□□□□ -1.95
USP54-217ENST00000498213 DCUN1D5Q9BTE7 237 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 TMED9Q9BVK6 235 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 GGTLC1Q9BX51 225 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 HRH4Q9H3N8 390 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 C12orf4Q9NQ89 552 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 THYN1Q9P016 225 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 RSL24D1Q9UHA3 163 aaKnown RBP2.87□□□□□ -1.95
USP54-217ENST00000498213 LINC00527Q9UJ94 153 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 ZNF221Q9UK13 617 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 ING4Q9UNL4 249 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 ZNF257Q9Y2Q1 563 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 PEX16Q9Y5Y5 336 aa2.87□□□□□ -1.95
USP54-217ENST00000498213 LOC102724200A0A096LPH7 203 aaPredicted RBP2.86□□□□□ -1.95
USP54-217ENST00000498213 TRBV7-1A0A0A6YYK4 115 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 IGLV9-49A0A0B4J1Y8 123 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 IGHV3-72A0A0B4J1Y9 119 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 CCDC160A6NGH7 325 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 H7C2Y5 167 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 ZNF701M0R085 212 aaPredicted RBP2.86□□□□□ -1.95
USP54-217ENST00000498213 MYL12BO14950 172 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 SOX15O60248 233 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 GGCTO75223 188 aaKnown RBP2.86□□□□□ -1.95
USP54-217ENST00000498213 CSN3P07498 182 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 SCTP09683 121 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 HSMCR30P0CW71 290 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 CT45A6P0DMU7 189 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 CT45A5P0DMU8 189 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 CT45A7P0DMV0 189 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 SLC2A2P11168 524 aaPredicted RBP2.86□□□□□ -1.95
USP54-217ENST00000498213 SERPINA2P20848 420 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 ASIPP42127 132 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 TMBIM6P55061 237 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 SNU13P55769 128 aaKnown RBP2.86□□□□□ -1.95
USP54-217ENST00000498213 WNT4P56705 351 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 ARPC4P59998 168 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 VBP1P61758 197 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 RPS27AP62979 156 aaKnown RBP2.86□□□□□ -1.95
USP54-217ENST00000498213 MRPS15P82914 257 aaKnown RBP2.86□□□□□ -1.95
USP54-217ENST00000498213 FABP5Q01469 135 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 MLLT11Q13015 90 aaPredicted RBP2.86□□□□□ -1.95
USP54-217ENST00000498213 PSG5Q15238 335 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 TRAM1Q15629 374 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 ECSCRQ19T08 205 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 C1orf100Q5SVJ3 147 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 GLIPR1L1Q6UWM5 242 aa2.86□□□□□ -1.95
USP54-217ENST00000498213 MMD2Q8IY49 270 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms