RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	TSEN15	Q8WW01	171 aa	Known RBP	3.16	□□□□□ -1.9
VPS52-222	ENST00000495981	ARL11	Q969Q4	196 aa		3.16	□□□□□ -1.9
VPS52-222	ENST00000495981	ISOC1	Q96CN7	298 aa		3.16	□□□□□ -1.9
VPS52-222	ENST00000495981	PGLYRP3	Q96LB9	341 aa		3.16	□□□□□ -1.9
VPS52-222	ENST00000495981	ZNF251	Q9BRH9	671 aa		3.16	□□□□□ -1.9
VPS52-222	ENST00000495981	TOLLIP	Q9H0E2	274 aa		3.16	□□□□□ -1.9
VPS52-222	ENST00000495981	PARP12	Q9H0J9	701 aa	Known RBP	3.16	□□□□□ -1.9
VPS52-222	ENST00000495981	OR51J1	Q9H342	316 aa		3.16	□□□□□ -1.9
VPS52-222	ENST00000495981	C12orf4	Q9NQ89	552 aa		3.16	□□□□□ -1.9
VPS52-222	ENST00000495981	PARP11	Q9NR21	331 aa		3.16	□□□□□ -1.9
VPS52-222	ENST00000495981	JPT1	Q9UK76	154 aa		3.16	□□□□□ -1.9
VPS52-222	ENST00000495981	ST3GAL6	Q9Y274	331 aa		3.16	□□□□□ -1.9
VPS52-222	ENST00000495981	VSIG4	Q9Y279	399 aa		3.16	□□□□□ -1.9
VPS52-222	ENST00000495981	WSB1	Q9Y6I7	421 aa		3.16	□□□□□ -1.9
VPS52-222	ENST00000495981	DAPL1	A0PJW8	107 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	PCP4L1	A6NKN8	68 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	LINC01619	G3V211	115 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981		H0YJW9	148 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981		J3QLW9	94 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	BET1	O15155	118 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	SLC22A1	O15245	554 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	WBP4	O75554	376 aa	Known RBP	3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	SNAPIN	O95295	136 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	MT-ND4	P03905	459 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	S100A9	P06702	114 aa	Known RBP	3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	OR8U9	P0C7N5	309 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	OCM2	P0CE71	109 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	OCM	P0CE72	109 aa	Predicted RBP	3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	ZNF19	P17023	458 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	RCC1	P18754	421 aa	Predicted RBP	3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	FAS	P25445	335 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	IL3RA	P26951	378 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	PPP1CC	P36873	323 aa	Known RBP	3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	RAB9A	P51151	201 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	ACTB	P60709	375 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	RPS11	P62280	158 aa	Known RBP eCLIP	3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	RAB40B	Q12829	278 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	RSU1	Q15404	277 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	HMGN3	Q15651	99 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	MUC21	Q5SSG8	566 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	FAM27D1	Q5T7N8	215 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	IL34	Q6ZMJ4	242 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981		Q8N9P0	234 aa	Predicted RBP	3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	ZNF485	Q8NCK3	441 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	ZNF680	Q8NEM1	530 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	NPB	Q8NG41	125 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	OR52I1	Q8NGK6	324 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	OR5D14	Q8NGL3	314 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	OR6Q1	Q8NGQ2	317 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	OR1N2	Q8NGR9	330 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	OR5AK2	Q8NH90	309 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	MRPL30	Q8TCC3	161 aa	Known RBP	3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	TRUB1	Q8WWH5	349 aa	Known RBP	3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	TMEM106A	Q96A25	262 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	SMIM19	Q96E16	107 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	CPNE2	Q96FN4	548 aa	Predicted RBP	3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	CENPN	Q96H22	339 aa	Predicted RBP	3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	RDH12	Q96NR8	316 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	ZNF184	Q99676	751 aa	Predicted RBP	3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	RASL11B	Q9BPW5	248 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	CABLES2	Q9BTV7	478 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	ANKRD60	Q9BZ19	345 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	BARHL1	Q9BZE3	327 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	RETN	Q9HD89	108 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	TMEM138	Q9NPI0	162 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	IMPAD1	Q9NX62	359 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	SPATA2	Q9UM82	520 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	GAB2	Q9UQC2	676 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	MRPS28	Q9Y2Q9	187 aa	Known RBP	3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	AK6	Q9Y3D8	172 aa	Known RBP	3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	CBY1	Q9Y3M2	126 aa		3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	CSDC2	Q9Y534	153 aa	Known RBP	3.15	□□□□□ -1.91
VPS52-222	ENST00000495981	FLG2	Q5D862	2391 aa	Predicted RBP	3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	TRBV7-9	A0A0J9YWB2	115 aa		3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	GATC	O43716	136 aa	Known RBP	3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	CRTAP	O75718	401 aa	Predicted RBP	3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	CRYZL1	O95825	349 aa		3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	IGLV2-11	P01706	119 aa		3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	TRBV12-3	P01733	135 aa		3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	AMBP	P02760	352 aa		3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	GZMH	P20718	246 aa		3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	ZNF93	P35789	620 aa	Predicted RBP	3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	NDUFV3	P56181	108 aa	Known RBP	3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	PPP3R1	P63098	170 aa		3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	PITPNA	Q00169	270 aa		3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	DEFA5	Q01523	94 aa		3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	SLC22A6	Q4U2R8	563 aa		3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	MORN2	Q502X0	79 aa		3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	LY6G6F	Q5SQ64	297 aa		3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	C6orf183	Q5T699	404 aa		3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	SYT6	Q5T7P8	510 aa	Predicted RBP	3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	OR2G6	Q5TZ20	316 aa		3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	C1orf146	Q5VVC0	180 aa		3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	MEDAG	Q5VYS4	303 aa		3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	ZNF57	Q68EA5	555 aa	Predicted RBP	3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	CD200R1L	Q6Q8B3	271 aa		3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	LINC00322	Q6ZN03	302 aa	Predicted RBP	3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	IDO2	Q6ZQW0	420 aa		3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	H2BFWT	Q7Z2G1	175 aa		3.14	□□□□□ -1.91
VPS52-222	ENST00000495981	LHFPL3	Q86UP9	236 aa		3.14	□□□□□ -1.91

Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms