RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 KIF26AQ9ULI4 1882 aaPredicted RBP13.67□□□□□ -0.22
CCDC88B-209ENST00000494080 BTF3P20290 206 aaKnown RBP13.67□□□□□ -0.22
CCDC88B-209ENST00000494080 RELBQ01201 579 aa13.67□□□□□ -0.22
CCDC88B-209ENST00000494080 C5orf24Q7Z6I8 188 aa13.67□□□□□ -0.22
CCDC88B-209ENST00000494080 PLPPR1Q8TBJ4 325 aa13.67□□□□□ -0.22
CCDC88B-209ENST00000494080 RRHO14718 337 aa13.67□□□□□ -0.22
CCDC88B-209ENST00000494080 OR13A1Q8NGR1 328 aa13.67□□□□□ -0.22
CCDC88B-209ENST00000494080 SCNM1Q9BWG6 230 aa13.67□□□□□ -0.22
CCDC88B-209ENST00000494080 PRSS1P07477 247 aa13.67□□□□□ -0.22
CCDC88B-209ENST00000494080 B3GALT5-AS1P59052 145 aa13.67□□□□□ -0.22
CCDC88B-209ENST00000494080 ASCL5Q7RTU5 278 aa13.67□□□□□ -0.22
CCDC88B-209ENST00000494080 SGK494Q96LW2 274 aa13.67□□□□□ -0.22
CCDC88B-209ENST00000494080 TMEM140Q9NV12 185 aa13.67□□□□□ -0.22
CCDC88B-209ENST00000494080 ZFP30Q9Y2G7 519 aa13.67□□□□□ -0.22
CCDC88B-209ENST00000494080 RPL39P5Q59GN2 51 aa13.66□□□□□ -0.22
CCDC88B-209ENST00000494080 ZNF324BQ6AW86 544 aaPredicted RBP13.66□□□□□ -0.22
CCDC88B-209ENST00000494080 GCSAMQ8N6F7 178 aa13.66□□□□□ -0.22
CCDC88B-209ENST00000494080 LINC01560Q8TB33 94 aa13.66□□□□□ -0.22
CCDC88B-209ENST00000494080 SLC35E4Q6ICL7 350 aa13.66□□□□□ -0.22
CCDC88B-209ENST00000494080 A8MWL6 223 aa13.66□□□□□ -0.22
CCDC88B-209ENST00000494080 NMUP48645 174 aa13.66□□□□□ -0.22
CCDC88B-209ENST00000494080 FBLN7Q53RD9 439 aa13.66□□□□□ -0.22
CCDC88B-209ENST00000494080 C10orf113Q5VZT2 155 aa13.66□□□□□ -0.22
CCDC88B-209ENST00000494080 ZCCHC24Q8N2G6 241 aaKnown RBP13.66□□□□□ -0.22
CCDC88B-209ENST00000494080 LRRK1Q38SD2 2015 aa13.66□□□□□ -0.22
CCDC88B-209ENST00000494080 PLAUP00749 431 aa13.66□□□□□ -0.22
CCDC88B-209ENST00000494080 TMPRSS3P57727 454 aa13.66□□□□□ -0.22
CCDC88B-209ENST00000494080 UNQ5815/PRO19632Q6UWF5 114 aa13.66□□□□□ -0.22
CCDC88B-209ENST00000494080 TMEM70Q9BUB7 260 aa13.66□□□□□ -0.22
CCDC88B-209ENST00000494080 HILPDAQ9Y5L2 63 aa13.66□□□□□ -0.22
CCDC88B-209ENST00000494080 FAM208BQ5VWN6 2430 aa13.65□□□□□ -0.22
CCDC88B-209ENST00000494080 E9PLN8 166 aa13.65□□□□□ -0.22
CCDC88B-209ENST00000494080 GTF3C1Q12789 2109 aa13.65□□□□□ -0.22
CCDC88B-209ENST00000494080 FAM216BQ8N7L0 139 aa13.65□□□□□ -0.22
CCDC88B-209ENST00000494080 SMIM12Q96EX1 92 aa13.65□□□□□ -0.22
CCDC88B-209ENST00000494080 PAXXQ9BUH6 204 aa13.65□□□□□ -0.22
CCDC88B-209ENST00000494080 WIPF3A6NGB9 483 aa13.65□□□□□ -0.22
CCDC88B-209ENST00000494080 CD40P25942 277 aa13.65□□□□□ -0.22
CCDC88B-209ENST00000494080 OCC1Q8TAD7 63 aa13.65□□□□□ -0.22
CCDC88B-209ENST00000494080 A0A1B0GUS0 222 aa13.65□□□□□ -0.22
CCDC88B-209ENST00000494080 CGAP01215 116 aa13.65□□□□□ -0.22
CCDC88B-209ENST00000494080 DIRC2Q96SL1 478 aa13.65□□□□□ -0.22
CCDC88B-209ENST00000494080 CACNA1AO00555 2505 aa13.65□□□□□ -0.22
CCDC88B-209ENST00000494080 OR2J3O76001 311 aa13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 LINC00869P0C866 280 aa13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 GCSAMLQ5JQS6 135 aa13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 HCP5Q6MZN7 132 aa13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 STPG3Q8N7X2 389 aa13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 KCNS1Q96KK3 526 aa13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 JPT1Q9UK76 154 aa13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 NUP210Q8TEM1 1887 aaPredicted RBP13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 TRAV24A0A0B4J272 114 aa13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 OR4C46A6NHA9 309 aa13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 SNAI2O43623 268 aa13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 NMSQ5H8A3 153 aa13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 ZGRF1Q86YA3 2104 aa13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 TMEM97Q5BJF2 176 aa13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 ACTL10Q5JWF8 245 aa13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 IDI2-AS1Q9NZ38 188 aa13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 POLR3KQ9Y2Y1 108 aaPredicted RBP13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 C17orf98A8MV24 154 aa13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 IL18BPO95998 194 aa13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 C1orf162Q8NEQ5 155 aaPredicted RBP13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 C2orf16Q68DN1 1984 aa13.64□□□□□ -0.23
CCDC88B-209ENST00000494080 ZNF785A8K8V0 405 aa13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 IQCF6A8MYZ5 107 aa13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 CIDEAO60543 219 aa13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 SS18L1O75177 396 aaPredicted RBP13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 IGHV3-48P01763 117 aa13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 MUC15Q8N387 334 aa13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 TMUB1Q9BVT8 246 aa13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 TCF19Q9Y242 345 aa13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 C19orf67A6NJJ6 358 aa13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 SLC25A17O43808 307 aa13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 LINC01551Q86U37 167 aa13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 RNASEH2CQ8TDP1 164 aaKnown RBP13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 DERL1Q9BUN8 251 aa13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 TECTAO75443 2155 aa13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 LOC389332A0A1B0GUA5 103 aa13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 HLA-DRB1P01911 266 aa13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 RIGQ13278 110 aa13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 OR4F17Q8NGA8 305 aa13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 PFN1P07737 140 aaKnown RBP13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 CSRP1P21291 193 aaKnown RBP13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 NUDT11Q96G61 164 aa13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 NABP2Q9BQ15 211 aa13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 PEF1Q9UBV8 284 aaKnown RBP13.63□□□□□ -0.23
CCDC88B-209ENST00000494080 GPR6P46095 362 aaPredicted RBP13.62□□□□□ -0.23
CCDC88B-209ENST00000494080 PGLYRP4Q96LB8 373 aa13.62□□□□□ -0.23
CCDC88B-209ENST00000494080 RNASE7Q9H1E1 156 aaKnown RBP13.62□□□□□ -0.23
CCDC88B-209ENST00000494080 THYN1Q9P016 225 aa13.62□□□□□ -0.23
CCDC88B-209ENST00000494080 RNF115Q9Y4L5 304 aa13.62□□□□□ -0.23
CCDC88B-209ENST00000494080 MYO18BQ8IUG5 2567 aa13.62□□□□□ -0.23
CCDC88B-209ENST00000494080 LILRA1O75019 489 aa13.62□□□□□ -0.23
CCDC88B-209ENST00000494080 ZNF324O75467 553 aaPredicted RBP13.62□□□□□ -0.23
CCDC88B-209ENST00000494080 AAMDCQ9H7C9 122 aa13.62□□□□□ -0.23
CCDC88B-209ENST00000494080 IFNL4K9M1U5 179 aa13.62□□□□□ -0.23
CCDC88B-209ENST00000494080 GNG7O60262 68 aa13.62□□□□□ -0.23
CCDC88B-209ENST00000494080 RPL8P62917 257 aaKnown RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms