RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 ZC4H2Q9NQZ6 224 aa11.44□□□□□ -0.58
USP39-217ENST00000491659 TECRQ9NZ01 308 aaKnown RBP11.44□□□□□ -0.58
USP39-217ENST00000491659 C3orf85A0A1B0GTC6 90 aa11.43□□□□□ -0.58
USP39-217ENST00000491659 IZUMO1RA6ND01 250 aa11.43□□□□□ -0.58
USP39-217ENST00000491659 DBX1A6NMT0 343 aa11.43□□□□□ -0.58
USP39-217ENST00000491659 A8MZ25 164 aa11.43□□□□□ -0.58
USP39-217ENST00000491659 TGOLN2O43493 480 aa11.43□□□□□ -0.58
USP39-217ENST00000491659 CTSDP07339 412 aaPredicted RBP11.43□□□□□ -0.58
USP39-217ENST00000491659 AKAIN1P0CW23 69 aa11.43□□□□□ -0.58
USP39-217ENST00000491659 TRIM16LQ309B1 348 aa11.43□□□□□ -0.58
USP39-217ENST00000491659 FAAP20Q6NZ36 180 aa11.43□□□□□ -0.58
USP39-217ENST00000491659 ADAMTSL5Q6ZMM2 481 aa11.43□□□□□ -0.58
USP39-217ENST00000491659 MARCH1Q8TCQ1 289 aa11.43□□□□□ -0.58
USP39-217ENST00000491659 TP53RKQ96S44 253 aa11.43□□□□□ -0.58
USP39-217ENST00000491659 THAP7Q9BT49 309 aaPredicted RBP11.43□□□□□ -0.58
USP39-217ENST00000491659 SLIRPQ9GZT3 109 aaKnown RBP11.43□□□□□ -0.58
USP39-217ENST00000491659 ZMAT4Q9H898 229 aa11.43□□□□□ -0.58
USP39-217ENST00000491659 PALMDQ9NP74 551 aa11.43□□□□□ -0.58
USP39-217ENST00000491659 C14orf166Q9Y224 244 aaKnown RBP11.43□□□□□ -0.58
USP39-217ENST00000491659 TMEM213A2RRL7 107 aa11.42□□□□□ -0.58
USP39-217ENST00000491659 B3GALNT1O75752 331 aa11.42□□□□□ -0.58
USP39-217ENST00000491659 EDN2P20800 178 aa11.42□□□□□ -0.58
USP39-217ENST00000491659 CD81P60033 236 aa11.42□□□□□ -0.58
USP39-217ENST00000491659 PRCDQ00LT1 54 aa11.42□□□□□ -0.58
USP39-217ENST00000491659 DEFB114Q30KQ6 69 aa11.42□□□□□ -0.58
USP39-217ENST00000491659 OR4C16Q8NGL9 310 aa11.42□□□□□ -0.58
USP39-217ENST00000491659 OR1P1Q8NH06 330 aa11.42□□□□□ -0.58
USP39-217ENST00000491659 MCFD2Q8NI22 146 aa11.42□□□□□ -0.58
USP39-217ENST00000491659 RNASE11Q8TAA1 199 aaKnown RBP11.42□□□□□ -0.58
USP39-217ENST00000491659 CACNG8Q8WXS5 425 aa11.42□□□□□ -0.58
USP39-217ENST00000491659 BSCL2Q96G97 398 aaPredicted RBP11.42□□□□□ -0.58
USP39-217ENST00000491659 PLEKHA3Q9HB20 300 aa11.42□□□□□ -0.58
USP39-217ENST00000491659 SLC2A8Q9NY64 477 aa11.42□□□□□ -0.58
USP39-217ENST00000491659 C21orf62Q9NYP8 219 aa11.42□□□□□ -0.58
USP39-217ENST00000491659 OR2T8A6NH00 312 aa11.41□□□□□ -0.58
USP39-217ENST00000491659 CBLN1P23435 193 aa11.41□□□□□ -0.58
USP39-217ENST00000491659 MFAP2P55001 183 aa11.41□□□□□ -0.58
USP39-217ENST00000491659 HSPE1P61604 102 aaKnown RBP11.41□□□□□ -0.58
USP39-217ENST00000491659 SURF2Q15527 256 aaPredicted RBP11.41□□□□□ -0.58
USP39-217ENST00000491659 GUCA2BQ16661 112 aa11.41□□□□□ -0.58
USP39-217ENST00000491659 Q56UQ5 140 aa11.41□□□□□ -0.58
USP39-217ENST00000491659 SPSB3Q6PJ21 355 aa11.41□□□□□ -0.58
USP39-217ENST00000491659 OR2C3Q8N628 320 aa11.41□□□□□ -0.58
USP39-217ENST00000491659 SLC35G3Q8N808 338 aa11.41□□□□□ -0.58
USP39-217ENST00000491659 MARC2Q969Z3 335 aa11.41□□□□□ -0.58
USP39-217ENST00000491659 RCHY1Q96PM5 261 aa11.41□□□□□ -0.58
USP39-217ENST00000491659 ATP6V0BQ99437 205 aa11.41□□□□□ -0.58
USP39-217ENST00000491659 PRRT1Q99946 306 aa11.41□□□□□ -0.58
USP39-217ENST00000491659 PDCD10Q9BUL8 212 aa11.41□□□□□ -0.58
USP39-217ENST00000491659 TUBA4BQ9H853 241 aa11.41□□□□□ -0.58
USP39-217ENST00000491659 C19orf73Q9NVV2 129 aa11.41□□□□□ -0.58
USP39-217ENST00000491659 UFC1Q9Y3C8 167 aa11.41□□□□□ -0.58
USP39-217ENST00000491659 IGHV3-21A0A0B4J1V1 117 aa11.4□□□□□ -0.58
USP39-217ENST00000491659 GSTZ1O43708 216 aaPredicted RBP11.4□□□□□ -0.58
USP39-217ENST00000491659 IGKV1-5P01602 117 aa11.4□□□□□ -0.58
USP39-217ENST00000491659 UCP1P25874 307 aa11.4□□□□□ -0.58
USP39-217ENST00000491659 ELLP55199 621 aaPredicted RBP11.4□□□□□ -0.58
USP39-217ENST00000491659 ERHP84090 104 aaKnown RBP11.4□□□□□ -0.58
USP39-217ENST00000491659 SP6Q3SY56 376 aa11.4□□□□□ -0.58
USP39-217ENST00000491659 ZNF57Q68EA5 555 aaPredicted RBP11.4□□□□□ -0.58
USP39-217ENST00000491659 UNQ9165/PRO28630Q6UXU0 137 aa11.4□□□□□ -0.58
USP39-217ENST00000491659 LINC00299Q6ZSB3 139 aa11.4□□□□□ -0.58
USP39-217ENST00000491659 UBAC2Q8NBM4 344 aa11.4□□□□□ -0.58
USP39-217ENST00000491659 ZNF114Q8NC26 417 aa11.4□□□□□ -0.58
USP39-217ENST00000491659 SCARB1Q8WTV0 552 aa11.4□□□□□ -0.58
USP39-217ENST00000491659 RRNAD1Q96FB5 475 aaKnown RBP11.4□□□□□ -0.58
USP39-217ENST00000491659 MISP3Q96FF7 219 aa11.4□□□□□ -0.58
USP39-217ENST00000491659 NEURL2Q9BR09 285 aa11.4□□□□□ -0.58
USP39-217ENST00000491659 ZNF436Q9C0F3 470 aaPredicted RBP11.4□□□□□ -0.58
USP39-217ENST00000491659 GAR1Q9NY12 217 aaKnown RBP11.4□□□□□ -0.58
USP39-217ENST00000491659 IGHV3-35A0A0C4DH35 117 aa11.39□□□□□ -0.59
USP39-217ENST00000491659 TEX13DA0A0J9YY54 714 aaPredicted RBP11.39□□□□□ -0.59
USP39-217ENST00000491659 FABP12A6NFH5 140 aa11.39□□□□□ -0.59
USP39-217ENST00000491659 K7EIM0 57 aa11.39□□□□□ -0.59
USP39-217ENST00000491659 TNFSF8P32971 234 aa11.39□□□□□ -0.59
USP39-217ENST00000491659 IZUMO4Q1ZYL8 232 aa11.39□□□□□ -0.59
USP39-217ENST00000491659 TM4SF20Q53R12 229 aa11.39□□□□□ -0.59
USP39-217ENST00000491659 UXS1Q8NBZ7 420 aa11.39□□□□□ -0.59
USP39-217ENST00000491659 TMEM190Q8WZ59 177 aa11.39□□□□□ -0.59
USP39-217ENST00000491659 WDR89Q96FK6 387 aaPredicted RBP11.39□□□□□ -0.59
USP39-217ENST00000491659 NXF2Q9GZY0 626 aaKnown RBP11.39□□□□□ -0.59
USP39-217ENST00000491659 NAA60Q9H7X0 242 aa11.39□□□□□ -0.59
USP39-217ENST00000491659 ANKRD20A5PA0PJZ0 165 aa11.38□□□□□ -0.59
USP39-217ENST00000491659 NDUFA4O00483 81 aa11.38□□□□□ -0.59
USP39-217ENST00000491659 IFNA17P01571 189 aa11.38□□□□□ -0.59
USP39-217ENST00000491659 OR5AC1P0C628 307 aa11.38□□□□□ -0.59
USP39-217ENST00000491659 P0C879 139 aa11.38□□□□□ -0.59
USP39-217ENST00000491659 SPINK9Q5DT21 86 aa11.38□□□□□ -0.59
USP39-217ENST00000491659 BTNL8Q6UX41 500 aa11.38□□□□□ -0.59
USP39-217ENST00000491659 TMEM61Q8N0U2 210 aa11.38□□□□□ -0.59
USP39-217ENST00000491659 OR51S1Q8NGJ8 323 aa11.38□□□□□ -0.59
USP39-217ENST00000491659 TM2D3Q9BRN9 247 aa11.38□□□□□ -0.59
USP39-217ENST00000491659 TMEM222Q9H0R3 208 aa11.38□□□□□ -0.59
USP39-217ENST00000491659 C5orf66Q9H5L9 145 aa11.38□□□□□ -0.59
USP39-217ENST00000491659 MRPL27Q9P0M9 148 aaKnown RBP11.38□□□□□ -0.59
USP39-217ENST00000491659 MLXQ9UH92 298 aa11.38□□□□□ -0.59
USP39-217ENST00000491659 SCP2D1Q9UJQ7 156 aa11.38□□□□□ -0.59
USP39-217ENST00000491659 ZNF785A8K8V0 405 aa11.37□□□□□ -0.59
USP39-217ENST00000491659 ST8SIA3O43173 380 aa11.37□□□□□ -0.59
USP39-217ENST00000491659 SNCAP37840 140 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms