RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 RPL8P62917 257 aaKnown RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 SELENOWP63302 87 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 HIST1H3AP68431 136 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 H3F3AP84243 136 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 RUNX1Q01196 453 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 DHRS2Q13268 280 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 EIF2B1Q14232 305 aaKnown RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 FZD2Q14332 565 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 EXOSC7Q15024 291 aaKnown RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 ELOBQ15370 118 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 OR8B8Q15620 311 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 OR7A5Q15622 319 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF77Q15935 545 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 POU2AF1Q16633 256 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 DEFB113Q30KQ7 82 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 SLC25A52Q3SY17 297 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 COA6Q5JTJ3 125 aaKnown RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 SOHLH1Q5JUK2 328 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 LY6G6FQ5SQ64 297 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM69Q5SWH9 247 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 FAM162BQ5T6X4 162 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 LCE1CQ5T751 118 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 LCE1BQ5T7P3 118 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 NIPAL3Q6P499 406 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 TNFAIP8L2Q6P589 184 aaPredicted RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 GLIPR1L1Q6UWM5 242 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 TEX43Q6ZNM6 134 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF621Q6ZSS3 439 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 SLC25A26Q70HW3 274 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 FA2HQ7L5A8 372 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 SLC36A1Q7Z2H8 476 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM25Q86YD3 366 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 PNKDQ8N490 385 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 SUMF2Q8NBJ7 301 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 LFNGQ8NES3 379 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 NOXO1Q8NFA2 376 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 OR11G2Q8NGC1 345 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 OR52R1Q8NGF1 315 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 OR5A2Q8NGI9 324 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 OR10G4Q8NGN3 311 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 OR5AR1Q8NGP9 310 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 OR6N2Q8NGY6 317 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 KIR2DL5BQ8NHK3 375 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 GPR119Q8TDV5 335 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 THEM6Q8WUY1 208 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 SKA2Q8WVK7 121 aaPredicted RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 RXFP2Q8WXD0 754 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 PSMF1Q92530 271 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 IL22RA2Q969J5 263 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 LRRC58Q96CX6 371 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 RAB39BQ96DA2 213 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 ZC2HC1AQ96GY0 325 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 KCTD7Q96MP8 289 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 OXGR1Q96P68 337 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 TSPAN32Q96QS1 320 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 ISG20L2Q9H9L3 353 aaKnown RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 POPDC3Q9HBV1 291 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 NPVFQ9HCQ7 196 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 ENY2Q9NPA8 101 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 NRN1Q9NPD7 142 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 AIG1Q9NVV5 245 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 CLN6Q9NWW5 311 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 NDUFB11Q9NX14 153 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 MED29Q9NX70 200 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 TAS2R5Q9NYW4 299 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 WRAP73Q9P2S5 460 aaPredicted RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 SHPKQ9UHJ6 478 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 BOKQ9UMX3 212 aaPredicted RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 SCML2Q9UQR0 700 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 PIGLQ9Y2B2 252 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 NTNG1Q9Y2I2 539 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 MEMO1Q9Y316 297 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 MRPS16Q9Y3D3 137 aaKnown RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 FIS1Q9Y3D6 152 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 HES2Q9Y543 173 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 WSB1Q9Y6I7 421 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF469Q96JG9 3925 aaPredicted RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 TACC2O95359 2948 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM131Q92545 1883 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 FER1L5A0AVI2 2057 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 ZGRF1Q86YA3 2104 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 MAP1AP78559 2803 aaPredicted RBP1.53□□□□□ -2.16
HMGB1-208ENST00000490788 TRAV8-7A0A075B6U6 113 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 A0A087WWC5 75 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 TRAV8-6A0A0B4J262 113 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 TRAV38-1A0A0B4J264 116 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 IGHV3-35A0A0C4DH35 117 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 CENPVL3A0A0U1RRI6 287 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF816-ZNF321PA0A0X1KG74 233 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 A0A1B0GW64 132 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM89A2RUT3 159 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 PSMB11A5LHX3 300 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM189A5PLL7 270 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 MAP1LC3B2A6NCE7 125 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 RNF222A6NCQ9 220 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 FAM159BA6NKW6 160 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 B4DEV8 164 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 H7C1C5 153 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 CLDN34H7C241 214 aa1.53□□□□□ -2.16
HMGB1-208ENST00000490788 M0R129 80 aa1.53□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms