RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 PARD6GQ9BYG4 376 aaPredicted RBP0.74□□□□□ -2.29
PTPN4-212ENST00000488896 WDR61Q9GZS3 305 aaKnown RBP0.74□□□□□ -2.29
PTPN4-212ENST00000488896 OR51V1Q9H2C8 321 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 C11orf68Q9H3H3 251 aaKnown RBP0.74□□□□□ -2.29
PTPN4-212ENST00000488896 PARVGQ9HBI0 331 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 IL36BQ9NZH7 164 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 RSL24D1Q9UHA3 163 aaKnown RBP0.74□□□□□ -2.29
PTPN4-212ENST00000488896 SOX21Q9Y651 276 aaPredicted RBP0.74□□□□□ -2.29
PTPN4-212ENST00000488896 NUP160Q12769 1436 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 TRAV9-1A0A075B6T8 112 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 A0A0J9YY10 115 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 A0A1B0GX78 115 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 PQLC2LA1A4F0 135 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 MEIS3P1A6NDR6 274 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 OR4C46A6NHA9 309 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 TMEM212A6NML5 194 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 FAAHO00519 579 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 HLA-DRB1P01911 266 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 PMP2P02689 132 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 IFNA16P05015 189 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 OMPP47874 163 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 EVX1P49640 407 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 EMP1P54849 157 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 PSME3P61289 254 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 RUNX1Q01196 453 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 IFITM2Q01629 132 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 KISS1Q15726 138 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 FAM27BQ5VT28 67 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 DCXRQ7Z4W1 244 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 OOSP2Q86WS3 158 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 RPS19BP1Q86WX3 136 aaKnown RBP0.73□□□□□ -2.29
PTPN4-212ENST00000488896 CLVS1Q8IUQ0 354 aaPredicted RBP0.73□□□□□ -2.29
PTPN4-212ENST00000488896 C20orf196Q8IYI0 205 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 LRRC25Q8N386 305 aaPredicted RBP0.73□□□□□ -2.29
PTPN4-212ENST00000488896 DEFB125Q8N687 156 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 MCFD2Q8NI22 146 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 SLC35B4Q969S0 331 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 OPTNQ96CV9 577 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 DGCR14Q96DF8 476 aaKnown RBP0.73□□□□□ -2.29
PTPN4-212ENST00000488896 COMMD5Q9GZQ3 224 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 CCDC90BQ9GZT6 254 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 CHST6Q9GZX3 395 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 PRTFDC1Q9NRG1 225 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.73□□□□□ -2.29
PTPN4-212ENST00000488896 SLC39A9Q9NUM3 307 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 UQCC1Q9NVA1 299 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 BAIAP2Q9UQB8 552 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 NOSIPQ9Y314 301 aaKnown RBP0.73□□□□□ -2.29
PTPN4-212ENST00000488896 POLEQ07864 2286 aa0.73□□□□□ -2.29
PTPN4-212ENST00000488896 C9orf84Q5VXU9 1444 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 ROS1P08922 2347 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 TTC21AQ8NDW8 1320 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 IGKV2-40A0A087WW87 121 aaPredicted RBP0.72□□□□□ -2.29
PTPN4-212ENST00000488896 TRAV14DV4A0A0A6YYC5 116 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 CLDN24A6NM45 220 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 MRPS14O60783 128 aaKnown RBP0.72□□□□□ -2.29
PTPN4-212ENST00000488896 KRT75O95678 551 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 IGKV2D-40P01614 121 aaPredicted RBP0.72□□□□□ -2.29
PTPN4-212ENST00000488896 IGHV3-7P01780 117 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 MSMBP08118 114 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 OR5G3P0C626 314 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 SMIM17P0DL12 118 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 CDKN2CP42773 168 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 RPS20P60866 119 aaKnown RBP0.72□□□□□ -2.29
PTPN4-212ENST00000488896 SUPT4H1P63272 117 aaKnown RBP0.72□□□□□ -2.29
PTPN4-212ENST00000488896 UBE2IP63279 158 aaKnown RBP0.72□□□□□ -2.29
PTPN4-212ENST00000488896 CTAG1AP78358 180 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 CDK5R1Q15078 307 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 SURF2Q15527 256 aaPredicted RBP0.72□□□□□ -2.29
PTPN4-212ENST00000488896 HIST3H3Q16695 136 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 NDUFA5Q16718 116 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 ARHGAP11BQ3KRB8 267 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 LPCAT3Q6P1A2 487 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 RPL22L1Q6P5R6 122 aaKnown RBP0.72□□□□□ -2.29
PTPN4-212ENST00000488896 LCN15Q6UWW0 184 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 KRT222Q8N1A0 295 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 CLDN22Q8N7P3 220 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 ZNF439Q8NDP4 499 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 OR8J2Q8NGG1 315 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 SERPINI1Q99574 410 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 DERL1Q9BUN8 251 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 OR8D2Q9GZM6 311 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 RNASE7Q9H1E1 156 aaKnown RBP0.72□□□□□ -2.29
PTPN4-212ENST00000488896 XAGE1AQ9HD64 81 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 FBXL12Q9NXK8 326 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 PRELID3BQ9Y3B1 194 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 MAST2Q6P0Q8 1798 aa0.72□□□□□ -2.29
PTPN4-212ENST00000488896 IGKV3-7A0A075B6H7 116 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 hCG_1818297A0A087WSY0 165 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 MEIKINA0A087WXM9 373 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 TRBV10-2A0A0K0K1G8 114 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 FAM236DA0A1B0GTK5 79 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 IRGMA1A4Y4 181 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 A8MT66 165 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 C1orf196B1AJZ1 125 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 TRAPPC2LH3BP13 241 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 PIRO00625 290 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 ATP5HO75947 161 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 CNIH1O95406 144 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 RPSAP08865 295 aaKnown RBP0.71□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms