RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 APOHP02749 345 aaPredicted RBP6.59□□□□□ -1.35
COL17A1-207ENST00000488320 CTXN2P0C2S0 81 aa6.59□□□□□ -1.35
COL17A1-207ENST00000488320 ZNF688P0C7X2 276 aa6.59□□□□□ -1.35
COL17A1-207ENST00000488320 RANBP1P43487 201 aa6.59□□□□□ -1.35
COL17A1-207ENST00000488320 MFAP4P55083 255 aa6.59□□□□□ -1.35
COL17A1-207ENST00000488320 WNT4P56705 351 aa6.59□□□□□ -1.35
COL17A1-207ENST00000488320 FAM3BP58499 235 aaPredicted RBP6.59□□□□□ -1.35
COL17A1-207ENST00000488320 BRWD1-AS2P59051 145 aa6.59□□□□□ -1.35
COL17A1-207ENST00000488320 NUTF2P61970 127 aaKnown RBP6.59□□□□□ -1.35
COL17A1-207ENST00000488320 THOC7Q6I9Y2 204 aaKnown RBP6.59□□□□□ -1.35
COL17A1-207ENST00000488320 HSD17B13Q7Z5P4 300 aaPredicted RBP6.59□□□□□ -1.35
COL17A1-207ENST00000488320 SPAG16Q8N0X2 631 aa6.59□□□□□ -1.35
COL17A1-207ENST00000488320 DMBX1Q8NFW5 382 aa6.59□□□□□ -1.35
COL17A1-207ENST00000488320 STXBP6Q8NFX7 210 aa6.59□□□□□ -1.35
COL17A1-207ENST00000488320 FRZBQ92765 325 aa6.59□□□□□ -1.35
COL17A1-207ENST00000488320 C18orf15Q96N68 181 aa6.59□□□□□ -1.35
COL17A1-207ENST00000488320 GPHA2Q96T91 129 aa6.59□□□□□ -1.35
COL17A1-207ENST00000488320 NIPSNAP3BQ9BS92 247 aa6.59□□□□□ -1.35
COL17A1-207ENST00000488320 C9orf16Q9BUW7 83 aa6.59□□□□□ -1.35
COL17A1-207ENST00000488320 C1QTNF4Q9BXJ3 329 aa6.59□□□□□ -1.35
COL17A1-207ENST00000488320 TMEM231Q9H6L2 316 aa6.59□□□□□ -1.35
COL17A1-207ENST00000488320 XCL2Q9UBD3 114 aa6.59□□□□□ -1.35
COL17A1-207ENST00000488320 RAB22AQ9UL26 194 aa6.59□□□□□ -1.35
COL17A1-207ENST00000488320 KCNK7Q9Y2U2 307 aa6.59□□□□□ -1.35
COL17A1-207ENST00000488320 F11RQ9Y624 299 aaKnown RBP6.59□□□□□ -1.35
COL17A1-207ENST00000488320 MYCBP2O75592 4640 aa6.58□□□□□ -1.36
COL17A1-207ENST00000488320 IGKV1D-8A0A087WSZ0 117 aa6.58□□□□□ -1.36
COL17A1-207ENST00000488320 IGKV1D-13A0A0B4J2D9 117 aa6.58□□□□□ -1.36
COL17A1-207ENST00000488320 TMEM189A5PLL7 270 aa6.58□□□□□ -1.36
COL17A1-207ENST00000488320 J3QL48 77 aa6.58□□□□□ -1.36
COL17A1-207ENST00000488320 K7EIM0 57 aa6.58□□□□□ -1.36
COL17A1-207ENST00000488320 IGKV1-13P0DP09 117 aa6.58□□□□□ -1.36
COL17A1-207ENST00000488320 NQO2P16083 231 aa6.58□□□□□ -1.36
COL17A1-207ENST00000488320 TAS2R31P59538 309 aa6.58□□□□□ -1.36
COL17A1-207ENST00000488320 WT1-ASQ06250 92 aa6.58□□□□□ -1.36
COL17A1-207ENST00000488320 RCN1Q15293 331 aa6.58□□□□□ -1.36
COL17A1-207ENST00000488320 TMEM88Q6PEY1 159 aa6.58□□□□□ -1.36
COL17A1-207ENST00000488320 OR1L8Q8NGR8 309 aa6.58□□□□□ -1.36
COL17A1-207ENST00000488320 OR10R2Q8NGX6 335 aa6.58□□□□□ -1.36
COL17A1-207ENST00000488320 SLC25A46Q96AG3 418 aa6.58□□□□□ -1.36
COL17A1-207ENST00000488320 FAM3DQ96BQ1 224 aa6.58□□□□□ -1.36
COL17A1-207ENST00000488320 NXF2Q9GZY0 626 aaKnown RBP6.58□□□□□ -1.36
COL17A1-207ENST00000488320 VSIRQ9H7M9 311 aa6.58□□□□□ -1.36
COL17A1-207ENST00000488320 VPS13BQ7Z7G8 4022 aa6.58□□□□□ -1.36
COL17A1-207ENST00000488320 IGHV3OR16-12A0A075B7B8 117 aa6.57□□□□□ -1.36
COL17A1-207ENST00000488320 TMEM272A0A1B0GTI8 110 aa6.57□□□□□ -1.36
COL17A1-207ENST00000488320 K7EQG2 157 aa6.57□□□□□ -1.36
COL17A1-207ENST00000488320 GNG7O60262 68 aa6.57□□□□□ -1.36
COL17A1-207ENST00000488320 HPRT1P00492 218 aa6.57□□□□□ -1.36
COL17A1-207ENST00000488320 RASSF2P50749 326 aa6.57□□□□□ -1.36
COL17A1-207ENST00000488320 Q5VSD8 79 aa6.57□□□□□ -1.36
COL17A1-207ENST00000488320 ZNF773Q6PK81 442 aa6.57□□□□□ -1.36
COL17A1-207ENST00000488320 TOMM20LQ6UXN7 152 aa6.57□□□□□ -1.36
COL17A1-207ENST00000488320 Q6ZS49 121 aa6.57□□□□□ -1.36
COL17A1-207ENST00000488320 C15orf53Q8NAA6 179 aa6.57□□□□□ -1.36
COL17A1-207ENST00000488320 LSM10Q969L4 123 aaKnown RBP6.57□□□□□ -1.36
COL17A1-207ENST00000488320 MOB3AQ96BX8 217 aa6.57□□□□□ -1.36
COL17A1-207ENST00000488320 MISP3Q96FF7 219 aa6.57□□□□□ -1.36
COL17A1-207ENST00000488320 GRAMD2BQ96HH9 432 aa6.57□□□□□ -1.36
COL17A1-207ENST00000488320 TXN2Q99757 166 aa6.57□□□□□ -1.36
COL17A1-207ENST00000488320 TMEM140Q9NV12 185 aa6.57□□□□□ -1.36
COL17A1-207ENST00000488320 UBR4Q5T4S7 5183 aa6.57□□□□□ -1.36
COL17A1-207ENST00000488320 FAT1Q14517 4588 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 TEX48A0A1B0GUV7 120 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 A0A1W2PS18 150 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 SULT1C2O00338 296 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 MFNGO00587 321 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 ATP8B1O43520 1251 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 IGHV3-48P01763 117 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 UCHL1P09936 223 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 HIST1H1DP16402 221 aaKnown RBP6.56□□□□□ -1.36
COL17A1-207ENST00000488320 KRTAP10-2P60368 255 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 EIF4EBP1Q13541 118 aaPredicted RBP6.56□□□□□ -1.36
COL17A1-207ENST00000488320 HES5Q5TA89 166 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 FAM222AQ5U5X8 452 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 GSG1LQ6UXU4 331 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 LYPD1Q8N2G4 141 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 NANOGP1Q8N7R0 232 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 SECTM1Q8WVN6 248 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 TMEM56Q96MV1 263 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 RAB40CQ96S21 281 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 GFI1Q99684 422 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 DCSTAMPQ9H295 470 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 CCL28Q9NRJ3 127 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 NDUFA4L2Q9NRX3 87 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 PTTG2Q9NZH5 202 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 DKK2Q9UBU2 259 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 OR51B2Q9Y5P1 312 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 RFNGQ9Y644 331 aa6.56□□□□□ -1.36
COL17A1-207ENST00000488320 METTL21EPA6NDL7 271 aa6.55□□□□□ -1.36
COL17A1-207ENST00000488320 SMIM9A6NGZ8 99 aa6.55□□□□□ -1.36
COL17A1-207ENST00000488320 SNAPC5O75971 98 aa6.55□□□□□ -1.36
COL17A1-207ENST00000488320 NPPCP23582 126 aa6.55□□□□□ -1.36
COL17A1-207ENST00000488320 DTYMKP23919 212 aa6.55□□□□□ -1.36
COL17A1-207ENST00000488320 FGF9P31371 208 aaPredicted RBP6.55□□□□□ -1.36
COL17A1-207ENST00000488320 ERVK-16P61578 105 aa6.55□□□□□ -1.36
COL17A1-207ENST00000488320 CATR1Q13166 79 aa6.55□□□□□ -1.36
COL17A1-207ENST00000488320 PSMG4Q5JS54 123 aa6.55□□□□□ -1.36
COL17A1-207ENST00000488320 CNIH2Q6PI25 160 aa6.55□□□□□ -1.36
COL17A1-207ENST00000488320 TPRA1Q86W33 373 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms