RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 REG4Q9BYZ8 158 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 SIPA1L1O43166 1804 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 PTPRBP23467 1997 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 RP1P56715 2156 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 ARFGEF3Q5TH69 2177 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 CACNA1BQ00975 2339 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 KCNK1O00180 336 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 FAAHO00519 579 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 SDCBPO00560 298 aaPredicted RBP0.34□□□□□ -2.36
VPS50-216ENST00000484954 DCTN3O75935 186 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 IFNA5P01569 189 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 HIST1H1EP10412 219 aaKnown RBP0.34□□□□□ -2.36
VPS50-216ENST00000484954 MYL12AP19105 171 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 HIST1H1TP22492 207 aaPredicted RBP0.34□□□□□ -2.36
VPS50-216ENST00000484954 NFYAP23511 347 aaPredicted RBP0.34□□□□□ -2.36
VPS50-216ENST00000484954 HAAOP46952 286 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 COTL1Q14019 142 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 GRK1Q15835 563 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 C10orf55Q5SWW7 151 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 OGFRL1Q5TC84 451 aaPredicted RBP0.34□□□□□ -2.36
VPS50-216ENST00000484954 AADACL3Q5VUY0 350 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 C9orf84Q5VXU9 1444 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 OR52R1Q8NGF1 315 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 TERB2Q8NHR7 220 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 C11orf40Q8WZ69 217 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 AQP3Q92482 292 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 TMEM106AQ96A25 262 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 OPTNQ96CV9 577 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 ODF3Q96PU9 254 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 NIPSNAP1Q9BPW8 284 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 YIPF3Q9GZM5 350 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 WDR61Q9GZS3 305 aaKnown RBP0.34□□□□□ -2.36
VPS50-216ENST00000484954 MRPL27Q9P0M9 148 aaKnown RBP0.34□□□□□ -2.36
VPS50-216ENST00000484954 NCOA6Q14686 2063 aaPredicted RBP0.34□□□□□ -2.36
VPS50-216ENST00000484954 MUC5ACP98088 5654 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 TTC21AQ8NDW8 1320 aa0.34□□□□□ -2.36
VPS50-216ENST00000484954 MAP3K5Q99683 1374 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 CPAMD8Q8IZJ3 1885 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 POLEQ07864 2286 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 IGKV1D-42A0A075B6H8 117 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 IGKV2D-26A0A0A0MRZ7 120 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 IGKV1-9A0A0C4DH69 117 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 BUB1B-PAK6H3BSN5 160 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 C19orf84I3L1E1 186 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 METTL15P1P0C7V9 234 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 CRYGAP11844 174 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 UCHL3P15374 230 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 EIF2B2P49770 351 aaKnown RBP0.33□□□□□ -2.36
VPS50-216ENST00000484954 NKX2-5P52952 324 aaPredicted RBP0.33□□□□□ -2.36
VPS50-216ENST00000484954 RPS20P60866 119 aaKnown RBP0.33□□□□□ -2.36
VPS50-216ENST00000484954 CNBPP62633 177 aaKnown RBP0.33□□□□□ -2.36
VPS50-216ENST00000484954 UBE2IP63279 158 aaKnown RBP0.33□□□□□ -2.36
VPS50-216ENST00000484954 IFITM2Q01629 132 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 HIST3H3Q16695 136 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 ACOT6Q3I5F7 207 aaPredicted RBP0.33□□□□□ -2.36
VPS50-216ENST00000484954 COQ5Q5HYK3 327 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 HIST2H3PS2Q5TEC6 136 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 LPCAT4Q643R3 524 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 C8orf74Q6P047 294 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 ZNF826PQ6ZT77 177 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 ZNF565Q8N9K5 539 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 OR13C4Q8NGS5 318 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 C11orf68Q9H3H3 251 aaKnown RBP0.33□□□□□ -2.36
VPS50-216ENST00000484954 NKIRAS1Q9NYS0 192 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 PKIGQ9Y2B9 76 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 C22orf24Q9Y442 160 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 NAV1Q8NEY1 1877 aa0.33□□□□□ -2.36
VPS50-216ENST00000484954 ADCY9O60503 1353 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 BRWD1Q9NSI6 2320 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 ALPK2Q86TB3 2170 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 A0A087WUJ7 227 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 LOC110117498A0A087WWA1 95 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 HLA-DRB1P01911 266 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 CALB1P05937 261 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 HTR1AP08908 422 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 HIST1H2BOP23527 126 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 FKBP2P26885 142 aaKnown RBP0.32□□□□□ -2.36
VPS50-216ENST00000484954 HIST1H2BBP33778 126 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 HIST1H2BDP58876 126 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 HIST1H2BCP62807 126 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 HBA1P69905 142 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 KCNJ8Q15842 424 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 HIST2H2BEQ16778 126 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 IMPG1Q17R60 797 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 HIST2H2BFQ5QNW6 126 aaPredicted RBP0.32□□□□□ -2.36
VPS50-216ENST00000484954 Q6ZS49 121 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 RPS19BP1Q86WX3 136 aaKnown RBP0.32□□□□□ -2.36
VPS50-216ENST00000484954 BPIFA4PQ86YQ2 179 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 C20orf196Q8IYI0 205 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 LRRC25Q8N386 305 aaPredicted RBP0.32□□□□□ -2.36
VPS50-216ENST00000484954 C12orf45Q8N5I9 185 aaPredicted RBP0.32□□□□□ -2.36
VPS50-216ENST00000484954 MRPL30Q8TCC3 161 aaKnown RBP0.32□□□□□ -2.36
VPS50-216ENST00000484954 H1FXQ92522 213 aaKnown RBP0.32□□□□□ -2.36
VPS50-216ENST00000484954 HIST1H2BHQ93079 126 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 HIST1H2BNQ99877 126 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 HIST1H2BMQ99879 126 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 FAM96AQ9H5X1 160 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 FBXL12Q9NXK8 326 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 LSM5Q9Y4Y9 91 aaKnown RBP0.32□□□□□ -2.36
VPS50-216ENST00000484954 MYOFQ9NZM1 2061 aa0.32□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms