RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 TRAV9-1A0A075B6T8 112 aa2.3□□□□□ -2.04
UPF3B-203ENST00000478840 IGHV1-18A0A0C4DH31 117 aa2.3□□□□□ -2.04
UPF3B-203ENST00000478840 A0A0G2JQZ4 141 aa2.3□□□□□ -2.04
UPF3B-203ENST00000478840 GGT3PA6NGU5 568 aa2.3□□□□□ -2.04
UPF3B-203ENST00000478840 IFNA10P01566 189 aa2.3□□□□□ -2.04
UPF3B-203ENST00000478840 NEFHP12036 1026 aa2.3□□□□□ -2.04
UPF3B-203ENST00000478840 HES1Q14469 280 aa2.3□□□□□ -2.04
UPF3B-203ENST00000478840 TAF1AQ15573 450 aaPredicted RBP2.3□□□□□ -2.04
UPF3B-203ENST00000478840 TPRXLQ17RH7 258 aa2.3□□□□□ -2.04
UPF3B-203ENST00000478840 ZNF791Q3KP31 576 aaPredicted RBP2.3□□□□□ -2.04
UPF3B-203ENST00000478840 DHRS4L2Q6PKH6 230 aa2.3□□□□□ -2.04
UPF3B-203ENST00000478840 MCFD2Q8NI22 146 aa2.3□□□□□ -2.04
UPF3B-203ENST00000478840 CHST6Q9GZX3 395 aa2.3□□□□□ -2.04
UPF3B-203ENST00000478840 VCX3BQ9H321 246 aa2.3□□□□□ -2.04
UPF3B-203ENST00000478840 UQCC1Q9NVA1 299 aa2.3□□□□□ -2.04
UPF3B-203ENST00000478840 NAT8Q9UHE5 227 aa2.3□□□□□ -2.04
UPF3B-203ENST00000478840 TTC21AQ8NDW8 1320 aa2.3□□□□□ -2.04
UPF3B-203ENST00000478840 RTL1A6NKG5 1358 aa2.3□□□□□ -2.04
UPF3B-203ENST00000478840 HECW1Q76N89 1606 aa2.29□□□□□ -2.04
UPF3B-203ENST00000478840 TMSB15BA0A087X1C1 80 aa2.29□□□□□ -2.04
UPF3B-203ENST00000478840 TRAV38-1A0A0B4J264 116 aa2.29□□□□□ -2.04
UPF3B-203ENST00000478840 MAGEA12P43365 314 aa2.29□□□□□ -2.04
UPF3B-203ENST00000478840 HINT1P49773 126 aaPredicted RBP2.29□□□□□ -2.04
UPF3B-203ENST00000478840 GLO1Q04760 184 aa2.29□□□□□ -2.04
UPF3B-203ENST00000478840 S100A7AQ86SG5 101 aa2.29□□□□□ -2.04
UPF3B-203ENST00000478840 OR4X2Q8NGF9 303 aa2.29□□□□□ -2.04
UPF3B-203ENST00000478840 RASSF5Q8WWW0 418 aa2.29□□□□□ -2.04
UPF3B-203ENST00000478840 H1FXQ92522 213 aaKnown RBP2.29□□□□□ -2.04
UPF3B-203ENST00000478840 TTTY12Q9BZ98 90 aa2.29□□□□□ -2.04
UPF3B-203ENST00000478840 PARVBQ9HBI1 364 aa2.29□□□□□ -2.04
UPF3B-203ENST00000478840 ARMC1Q9NVT9 282 aa2.29□□□□□ -2.04
UPF3B-203ENST00000478840 PLXNA3P51805 1871 aa2.28□□□□□ -2.04
UPF3B-203ENST00000478840 IGLV3-9A0A075B6K5 115 aa2.28□□□□□ -2.04
UPF3B-203ENST00000478840 ARRDC5A6NEK1 342 aa2.28□□□□□ -2.04
UPF3B-203ENST00000478840 NFYAP23511 347 aaPredicted RBP2.28□□□□□ -2.04
UPF3B-203ENST00000478840 DEFA1P59665 94 aa2.28□□□□□ -2.04
UPF3B-203ENST00000478840 ERHP84090 104 aaKnown RBP2.28□□□□□ -2.04
UPF3B-203ENST00000478840 SPANXN3Q5MJ09 141 aa2.28□□□□□ -2.04
UPF3B-203ENST00000478840 SLC36A1Q7Z2H8 476 aa2.28□□□□□ -2.04
UPF3B-203ENST00000478840 C9orf16Q9BUW7 83 aa2.28□□□□□ -2.04
UPF3B-203ENST00000478840 RNF122Q9H9V4 155 aa2.28□□□□□ -2.04
UPF3B-203ENST00000478840 STOML2Q9UJZ1 356 aa2.28□□□□□ -2.04
UPF3B-203ENST00000478840 KIF13BQ9NQT8 1826 aa2.28□□□□□ -2.04
UPF3B-203ENST00000478840 MALRD1Q5VYJ5 2156 aa2.27□□□□□ -2.05
UPF3B-203ENST00000478840 SCAF11Q99590 1463 aaKnown RBP2.27□□□□□ -2.05
UPF3B-203ENST00000478840 RFPL4AA6NLU0 287 aa2.27□□□□□ -2.05
UPF3B-203ENST00000478840 RFPL4AL1F8VTS6 287 aa2.27□□□□□ -2.05
UPF3B-203ENST00000478840 H3BRN7 92 aa2.27□□□□□ -2.05
UPF3B-203ENST00000478840 SLC22A1O15245 554 aa2.27□□□□□ -2.05
UPF3B-203ENST00000478840 S1PR2O95136 353 aa2.27□□□□□ -2.05
UPF3B-203ENST00000478840 C8GP07360 202 aa2.27□□□□□ -2.05
UPF3B-203ENST00000478840 PPIBP23284 216 aaKnown RBP2.27□□□□□ -2.05
UPF3B-203ENST00000478840 ZNF80P51504 273 aaPredicted RBP2.27□□□□□ -2.05
UPF3B-203ENST00000478840 RELAQ04206 551 aa2.27□□□□□ -2.05
UPF3B-203ENST00000478840 MOGQ16653 247 aa2.27□□□□□ -2.05
UPF3B-203ENST00000478840 LCE1CQ5T751 118 aa2.27□□□□□ -2.05
UPF3B-203ENST00000478840 LCE1BQ5T7P3 118 aa2.27□□□□□ -2.05
UPF3B-203ENST00000478840 HACD4Q5VWC8 232 aa2.27□□□□□ -2.05
UPF3B-203ENST00000478840 OR11H6Q8NGC7 330 aa2.27□□□□□ -2.05
UPF3B-203ENST00000478840 CEP19Q96LK0 163 aa2.27□□□□□ -2.05
UPF3B-203ENST00000478840 TXNDC17Q9BRA2 123 aa2.27□□□□□ -2.05
UPF3B-203ENST00000478840 CCDC90BQ9GZT6 254 aa2.27□□□□□ -2.05
UPF3B-203ENST00000478840 FAM32AQ9Y421 112 aaKnown RBP2.27□□□□□ -2.05
UPF3B-203ENST00000478840 RTEL1-TNFRSF6BF6WH68 1400 aa2.26□□□□□ -2.05
UPF3B-203ENST00000478840 hCG_1818297A0A087WSY0 165 aa2.26□□□□□ -2.05
UPF3B-203ENST00000478840 SIGLEC16A6NMB1 481 aa2.26□□□□□ -2.05
UPF3B-203ENST00000478840 A8MT66 165 aa2.26□□□□□ -2.05
UPF3B-203ENST00000478840 ZNF705FA8MVS1 300 aaPredicted RBP2.26□□□□□ -2.05
UPF3B-203ENST00000478840 SULT1B1O43704 296 aa2.26□□□□□ -2.05
UPF3B-203ENST00000478840 OR2J2O76002 312 aa2.26□□□□□ -2.05
UPF3B-203ENST00000478840 PPBPP02775 128 aa2.26□□□□□ -2.05
UPF3B-203ENST00000478840 PPP1R2P41236 205 aa2.26□□□□□ -2.05
UPF3B-203ENST00000478840 FXYD2P54710 66 aa2.26□□□□□ -2.05
UPF3B-203ENST00000478840 KISS1Q15726 138 aa2.26□□□□□ -2.05
UPF3B-203ENST00000478840 PPP1R2P3Q6NXS1 205 aa2.26□□□□□ -2.05
UPF3B-203ENST00000478840 KRT222Q8N1A0 295 aa2.26□□□□□ -2.05
UPF3B-203ENST00000478840 GNPDA2Q8TDQ7 276 aa2.26□□□□□ -2.05
UPF3B-203ENST00000478840 AP3S1Q92572 193 aa2.26□□□□□ -2.05
UPF3B-203ENST00000478840 C2orf50Q96LR7 162 aa2.26□□□□□ -2.05
UPF3B-203ENST00000478840 PHB2Q99623 299 aa2.26□□□□□ -2.05
UPF3B-203ENST00000478840 DOHHQ9BU89 302 aa2.26□□□□□ -2.05
UPF3B-203ENST00000478840 ENY2Q9NPA8 101 aa2.26□□□□□ -2.05
UPF3B-203ENST00000478840 DENND4BO75064 1496 aaPredicted RBP2.26□□□□□ -2.05
UPF3B-203ENST00000478840 STRCP1A6NGW2 1772 aa2.26□□□□□ -2.05
UPF3B-203ENST00000478840 GREB1Q4ZG55 1949 aa2.25□□□□□ -2.05
UPF3B-203ENST00000478840 CPAMD8Q8IZJ3 1885 aa2.25□□□□□ -2.05
UPF3B-203ENST00000478840 TRBV10-2A0A0K0K1G8 114 aa2.25□□□□□ -2.05
UPF3B-203ENST00000478840 OR51F1A6NGY5 319 aa2.25□□□□□ -2.05
UPF3B-203ENST00000478840 TRAPPC2LH3BP13 241 aa2.25□□□□□ -2.05
UPF3B-203ENST00000478840 BUB1B-PAK6H3BSN5 160 aa2.25□□□□□ -2.05
UPF3B-203ENST00000478840 DEFA4P12838 97 aa2.25□□□□□ -2.05
UPF3B-203ENST00000478840 RPS4Y1P22090 263 aaKnown RBP2.25□□□□□ -2.05
UPF3B-203ENST00000478840 PEBP1P30086 187 aaKnown RBP2.25□□□□□ -2.05
UPF3B-203ENST00000478840 TMEM258P61165 79 aa2.25□□□□□ -2.05
UPF3B-203ENST00000478840 HSPE1P61604 102 aaKnown RBP2.25□□□□□ -2.05
UPF3B-203ENST00000478840 FAM27BQ5VT28 67 aa2.25□□□□□ -2.05
UPF3B-203ENST00000478840 KTN1-AS1Q86SY8 53 aa2.25□□□□□ -2.05
UPF3B-203ENST00000478840 TERB2Q8NHR7 220 aa2.25□□□□□ -2.05
UPF3B-203ENST00000478840 PRRT1Q99946 306 aa2.25□□□□□ -2.05
UPF3B-203ENST00000478840 TIMM21Q9BVV7 248 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms