RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 TRAPPC2BP0DI82 140 aa12.47□□□□□ -0.41
VIM-204ENST00000478746 TAS2R31P59538 309 aa12.47□□□□□ -0.41
VIM-204ENST00000478746 Q56UQ5 140 aa12.47□□□□□ -0.41
VIM-204ENST00000478746 F8W735 103 aaPredicted RBP12.46□□□□□ -0.41
VIM-204ENST00000478746 YIF1AO95070 293 aa12.46□□□□□ -0.41
VIM-204ENST00000478746 CTSGP08311 255 aa12.46□□□□□ -0.41
VIM-204ENST00000478746 P0DMU3 169 aa12.46□□□□□ -0.41
VIM-204ENST00000478746 FAM231AP0DMU4 169 aa12.46□□□□□ -0.41
VIM-204ENST00000478746 FAM231CP0DMU5 169 aa12.46□□□□□ -0.41
VIM-204ENST00000478746 NQO2P16083 231 aa12.46□□□□□ -0.41
VIM-204ENST00000478746 RAB3BP20337 219 aa12.46□□□□□ -0.41
VIM-204ENST00000478746 MYL9P24844 172 aa12.46□□□□□ -0.41
VIM-204ENST00000478746 HACD4Q5VWC8 232 aa12.46□□□□□ -0.41
VIM-204ENST00000478746 FAM90A2PQ658T7 463 aa12.46□□□□□ -0.41
VIM-204ENST00000478746 THOC7Q6I9Y2 204 aaKnown RBP12.46□□□□□ -0.41
VIM-204ENST00000478746 HSD17B13Q7Z5P4 300 aaPredicted RBP12.46□□□□□ -0.41
VIM-204ENST00000478746 CCL28Q9NRJ3 127 aa12.46□□□□□ -0.41
VIM-204ENST00000478746 PLA2G2EQ9NZK7 142 aa12.46□□□□□ -0.41
VIM-204ENST00000478746 SSR3Q9UNL2 185 aa12.46□□□□□ -0.41
VIM-204ENST00000478746 TRAV14DV4A0A0A6YYC5 116 aa12.45□□□□□ -0.42
VIM-204ENST00000478746 TRDV1A0A1B0GX56 115 aa12.45□□□□□ -0.42
VIM-204ENST00000478746 RBFOX2O43251 390 aaKnown RBP eCLIP12.45□□□□□ -0.42
VIM-204ENST00000478746 HPRT1P00492 218 aa12.45□□□□□ -0.42
VIM-204ENST00000478746 MIFP14174 115 aa12.45□□□□□ -0.42
VIM-204ENST00000478746 RELQ04864 619 aaPredicted RBP12.45□□□□□ -0.42
VIM-204ENST00000478746 WT1-ASQ06250 92 aa12.45□□□□□ -0.42
VIM-204ENST00000478746 POU2AF1Q16633 256 aa12.45□□□□□ -0.42
VIM-204ENST00000478746 LEMD1Q68G75 181 aa12.45□□□□□ -0.42
VIM-204ENST00000478746 GPR141Q7Z602 305 aa12.45□□□□□ -0.42
VIM-204ENST00000478746 DMBX1Q8NFW5 382 aa12.45□□□□□ -0.42
VIM-204ENST00000478746 NUDCD2Q8WVJ2 157 aa12.45□□□□□ -0.42
VIM-204ENST00000478746 SECTM1Q8WVN6 248 aa12.45□□□□□ -0.42
VIM-204ENST00000478746 IGHV3OR16-13A0A075B7E8 117 aa12.44□□□□□ -0.42
VIM-204ENST00000478746 IGHV3-74A0A0B4J1X5 117 aa12.44□□□□□ -0.42
VIM-204ENST00000478746 TEX50A0A1B0GTY4 177 aa12.44□□□□□ -0.42
VIM-204ENST00000478746 SULT1C2O00338 296 aa12.44□□□□□ -0.42
VIM-204ENST00000478746 FGF2P09038 288 aa12.44□□□□□ -0.42
VIM-204ENST00000478746 RPL5P46777 297 aaKnown RBP12.44□□□□□ -0.42
VIM-204ENST00000478746 ALDH3B2P48448 385 aa12.44□□□□□ -0.42
VIM-204ENST00000478746 DEFB131AP59861 70 aa12.44□□□□□ -0.42
VIM-204ENST00000478746 LGALS9BQ3B8N2 356 aa12.44□□□□□ -0.42
VIM-204ENST00000478746 TCF24Q7RTU0 167 aa12.44□□□□□ -0.42
VIM-204ENST00000478746 STHQ8IWL8 128 aa12.44□□□□□ -0.42
VIM-204ENST00000478746 OR1L8Q8NGR8 309 aa12.44□□□□□ -0.42
VIM-204ENST00000478746 OR13F1Q8NGS4 319 aa12.44□□□□□ -0.42
VIM-204ENST00000478746 YIPF6Q96EC8 236 aa12.44□□□□□ -0.42
VIM-204ENST00000478746 OR10C1Q96KK4 312 aa12.44□□□□□ -0.42
VIM-204ENST00000478746 TMEM140Q9NV12 185 aa12.44□□□□□ -0.42
VIM-204ENST00000478746 ANXA10Q9UJ72 324 aa12.44□□□□□ -0.42
VIM-204ENST00000478746 F11RQ9Y624 299 aaKnown RBP12.44□□□□□ -0.42
VIM-204ENST00000478746 LOC100506127A0A0U1RQW1 187 aa12.43□□□□□ -0.42
VIM-204ENST00000478746 K7EIM0 57 aa12.43□□□□□ -0.42
VIM-204ENST00000478746 DNASE2O00115 360 aaPredicted RBP12.43□□□□□ -0.42
VIM-204ENST00000478746 NUPL2O15504 423 aaKnown RBP12.43□□□□□ -0.42
VIM-204ENST00000478746 DFFBO76075 338 aa12.43□□□□□ -0.42
VIM-204ENST00000478746 CD5P06127 495 aa12.43□□□□□ -0.42
VIM-204ENST00000478746 MSMO1Q15800 293 aa12.43□□□□□ -0.42
VIM-204ENST00000478746 C22orf42Q6IC83 251 aa12.43□□□□□ -0.42
VIM-204ENST00000478746 ZNF575Q86XF7 245 aa12.43□□□□□ -0.42
VIM-204ENST00000478746 ZBTB34Q8NCN2 500 aa12.43□□□□□ -0.42
VIM-204ENST00000478746 DGCR14Q96DF8 476 aaKnown RBP12.43□□□□□ -0.42
VIM-204ENST00000478746 HINT2Q9BX68 163 aa12.43□□□□□ -0.42
VIM-204ENST00000478746 HSPG2P98160 4391 aa12.42□□□□□ -0.42
VIM-204ENST00000478746 ELOA3CA0A087WX78 387 aaPredicted RBP12.42□□□□□ -0.42
VIM-204ENST00000478746 DEFB131BA0A096LNP1 70 aa12.42□□□□□ -0.42
VIM-204ENST00000478746 TMEM235A6NFC5 223 aa12.42□□□□□ -0.42
VIM-204ENST00000478746 FGF9P31371 208 aaPredicted RBP12.42□□□□□ -0.42
VIM-204ENST00000478746 GNG2P59768 71 aa12.42□□□□□ -0.42
VIM-204ENST00000478746 CATR1Q13166 79 aa12.42□□□□□ -0.42
VIM-204ENST00000478746 TMEM41BQ5BJD5 291 aa12.42□□□□□ -0.42
VIM-204ENST00000478746 GIMAP1Q8WWP7 306 aa12.42□□□□□ -0.42
VIM-204ENST00000478746 ZNF414Q96IQ9 312 aa12.42□□□□□ -0.42
VIM-204ENST00000478746 FUNDC2Q9BWH2 189 aa12.42□□□□□ -0.42
VIM-204ENST00000478746 TXNL4BQ9NX01 149 aaKnown RBP12.42□□□□□ -0.42
VIM-204ENST00000478746 SSX5O60225 188 aa12.41□□□□□ -0.42
VIM-204ENST00000478746 AMBPP02760 352 aa12.41□□□□□ -0.42
VIM-204ENST00000478746 EIF4EP06730 217 aaKnown RBP12.41□□□□□ -0.42
VIM-204ENST00000478746 GIG44P09565 113 aaPredicted RBP12.41□□□□□ -0.42
VIM-204ENST00000478746 FCGR2CP31995 323 aa12.41□□□□□ -0.42
VIM-204ENST00000478746 LSM10Q969L4 123 aaKnown RBP12.41□□□□□ -0.42
VIM-204ENST00000478746 NDUFAF3Q9BU61 184 aa12.41□□□□□ -0.42
VIM-204ENST00000478746 SLC5A7Q9GZV3 580 aa12.41□□□□□ -0.42
VIM-204ENST00000478746 MS4A6AQ9H2W1 248 aa12.41□□□□□ -0.42
VIM-204ENST00000478746 PLEKHA2Q9HB19 425 aa12.41□□□□□ -0.42
VIM-204ENST00000478746 NDUFA4L2Q9NRX3 87 aa12.41□□□□□ -0.42
VIM-204ENST00000478746 SMIM30A4D0T7 59 aa12.4□□□□□ -0.42
VIM-204ENST00000478746 ZNF705EA8MWA4 302 aaPredicted RBP12.4□□□□□ -0.42
VIM-204ENST00000478746 SCGNO76038 276 aa12.4□□□□□ -0.42
VIM-204ENST00000478746 MFAP4P55083 255 aa12.4□□□□□ -0.42
VIM-204ENST00000478746 ARPC4P59998 168 aa12.4□□□□□ -0.42
VIM-204ENST00000478746 RPL11P62913 178 aaKnown RBP12.4□□□□□ -0.42
VIM-204ENST00000478746 GPR107Q5VW38 600 aa12.4□□□□□ -0.42
VIM-204ENST00000478746 DUSP18Q8NEJ0 188 aa12.4□□□□□ -0.42
VIM-204ENST00000478746 X6R8D5 127 aa12.4□□□□□ -0.42
VIM-204ENST00000478746 AGRNO00468 2067 aa12.4□□□□□ -0.42
VIM-204ENST00000478746 ST8SIA3O43173 380 aa12.39□□□□□ -0.43
VIM-204ENST00000478746 ERVK-16P61578 105 aa12.39□□□□□ -0.43
VIM-204ENST00000478746 LSM3P62310 102 aaKnown RBP12.39□□□□□ -0.43
VIM-204ENST00000478746 C12orf74Q32Q52 190 aa12.39□□□□□ -0.43
VIM-204ENST00000478746 MORN3Q6PF18 240 aaPredicted RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms