RNA–Protein interactions for RNA: ENST00000477541.1

HLA-DMA-208, Transcript of major histocompatibility complex, class II, DM alpha, human

Gene HLA-DMA, Length 1,735 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HLA-DMA-208	ENST00000477541	SSMEM1	Q8WWF3	244 aa		11.15	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	MSL2	Q9HCI7	577 aa		11.15	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	IZUMO1R	A6ND01	250 aa		11.14	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	SRRM5	B3KS81	715 aa		11.14	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	LINC00869	P0C866	280 aa		11.14	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	AMT	P48728	403 aa		11.14	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	LOXL3	P58215	753 aa		11.14	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	C3AR1	Q16581	482 aa		11.14	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	SPATA45	Q537H7	98 aa		11.14	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	ABHD12	Q8N2K0	398 aa		11.14	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	CD177	Q8N6Q3	437 aa		11.14	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	FAM169B	Q8N8A8	192 aa		11.14	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	STARD4	Q96DR4	205 aa		11.14	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	CLCF1	Q9UBD9	225 aa		11.14	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	HELZ2	Q9BYK8	2649 aa	Known RBP	11.14	□□□□□ -0.63
HLA-DMA-208	ENST00000477541		A0A1W2PS18	150 aa		11.13	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	IGLC2	P0DOY2	106 aa		11.13	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	IGLC3	P0DOY3	106 aa		11.13	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	KRTDAP	P60985	99 aa		11.13	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	GUSBP1	Q15486	140 aa		11.13	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	CYB5R2	Q6BCY4	276 aa		11.13	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	FAM53A	Q6NSI3	398 aa	Predicted RBP	11.13	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	LINC00696	Q6ZRV3	163 aa		11.13	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	TMEM178A	Q8NBL3	297 aa		11.13	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	RFESD	Q8TAC1	157 aa		11.13	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	ORAOV1	Q8WV07	137 aa		11.13	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	LRRC29	Q8WV35	223 aa		11.13	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	NABP2	Q9BQ15	211 aa		11.13	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	MRPS16	Q9Y3D3	137 aa	Known RBP	11.13	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	TET2	Q6N021	2002 aa	Predicted RBP	11.13	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	SMG1	Q96Q15	3661 aa	Known RBP	11.13	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	DEFB108A	A8MXU0	73 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	C9orf172	C9J069	976 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	CA2	P00918	260 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	CGA	P01215	116 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	NPS	P0C0P6	89 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	HNF1A	P20823	631 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	ARG2	P78540	354 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	PSG5	Q15238	335 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	TDRG1	Q3Y452	100 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	SPATA31B1P	Q5VZV4	182 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	FAM214B	Q7L5A3	538 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	IGF2BP2-AS1	Q96M15	143 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	SPRR3	Q9UBC9	169 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	METRN	Q9UJH8	293 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	CDC42EP3	Q9UKI2	254 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	DMXL2	Q8TDJ6	3036 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	DNAJC13	O75165	2243 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	PATE3	B3GLJ2	98 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	SELENOV	P59797	346 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	PRCD	Q00LT1	54 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	OR5I1	Q13606	314 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	C2orf83	Q53S99	150 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	IBA57	Q5T440	356 aa	Known RBP	11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	OR4A47	Q6IF82	309 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	CXorf67	Q86X51	503 aa	Predicted RBP	11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	BORCS7	Q96B45	105 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	SMIM12	Q96EX1	92 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	PLEKHA3	Q9HB20	300 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	ZNF331	Q9NQX6	463 aa	Predicted RBP	11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	SLC35D1	Q9NTN3	355 aa		11.12	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	DPRX	A6NFQ7	191 aa		11.11	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	BMPR1B	O00238	502 aa		11.11	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	IGLV1-44	P01699	117 aa		11.11	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	APCS	P02743	223 aa		11.11	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	C8orf88	P0DMB2	117 aa		11.11	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	CGB3	P0DN86	165 aa		11.11	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	CGB7	P0DN87	165 aa		11.11	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	IGFBP2	P18065	325 aa		11.11	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	CRYBB3	P26998	211 aa		11.11	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	CHRNB4	P30926	498 aa		11.11	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	HNRNPA3	P51991	378 aa	Known RBP	11.11	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	KLF5	Q13887	457 aa	Predicted RBP	11.11	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	MIR17HG	Q75NE6	70 aa		11.11	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	OR1L8	Q8NGR8	309 aa		11.11	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	CACNG8	Q8WXS5	425 aa		11.11	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	LOXL4	Q96JB6	756 aa		11.11	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	OR2V2	Q96R30	315 aa		11.11	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	CALY	Q9NYX4	217 aa		11.11	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	IDI2-AS1	Q9NZ38	188 aa		11.11	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	WDFY3	Q8IZQ1	3526 aa		11.11	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	AKAP13	Q12802	2813 aa		11.1	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	TRAV3	A0A0B4J244	114 aa		11.1	□□□□□ -0.63
HLA-DMA-208	ENST00000477541		A6NNC1	897 aa		11.1	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	INS-IGF2	F8WCM5	200 aa		11.1	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	FOXH1	O75593	365 aa		11.1	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	ZNF83	P51522	516 aa		11.1	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	LINC00205	P59089	165 aa		11.1	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	EDDM3A	Q14507	147 aa		11.1	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	RPL39P5	Q59GN2	51 aa		11.1	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	TPRX1	Q8N7U7	411 aa		11.1	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	ZNF439	Q8NDP4	499 aa		11.1	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	OR2D3	Q8NGH3	330 aa		11.1	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	TXN2	Q99757	166 aa		11.1	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	LAMTOR2	Q9Y2Q5	125 aa		11.1	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	OR51B2	Q9Y5P1	312 aa		11.1	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	IGSF10	Q6WRI0	2623 aa		11.1	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	IGKV1D-17	A0A075B6S4	117 aa		11.09	□□□□□ -0.63
HLA-DMA-208	ENST00000477541		F2Z2F3	143 aa		11.09	□□□□□ -0.63
HLA-DMA-208	ENST00000477541	HYPM	O75409	117 aa		11.09	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms