RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 IGHV3-48P01763 117 aa12.44□□□□□ -0.42
USP40-212ENST00000473191 IFNA6P05013 189 aa12.44□□□□□ -0.42
USP40-212ENST00000473191 RCVRNP35243 200 aa12.44□□□□□ -0.42
USP40-212ENST00000473191 RORCP51449 518 aa12.44□□□□□ -0.42
USP40-212ENST00000473191 SPINK9Q5DT21 86 aa12.44□□□□□ -0.42
USP40-212ENST00000473191 OR4D10Q8NGI6 311 aa12.44□□□□□ -0.42
USP40-212ENST00000473191 OR52I2Q8NH67 350 aa12.44□□□□□ -0.42
USP40-212ENST00000473191 C21orf62Q9NYP8 219 aa12.44□□□□□ -0.42
USP40-212ENST00000473191 UBQLN2Q9UHD9 624 aa12.44□□□□□ -0.42
USP40-212ENST00000473191 SNAPC5O75971 98 aa12.43□□□□□ -0.42
USP40-212ENST00000473191 GABARAPO95166 117 aa12.43□□□□□ -0.42
USP40-212ENST00000473191 GPR107Q5VW38 600 aa12.43□□□□□ -0.42
USP40-212ENST00000473191 THOC7Q6I9Y2 204 aaKnown RBP12.43□□□□□ -0.42
USP40-212ENST00000473191 CADM3Q8N126 398 aa12.43□□□□□ -0.42
USP40-212ENST00000473191 ABHD1Q96SE0 405 aa12.43□□□□□ -0.42
USP40-212ENST00000473191 MRPL27Q9P0M9 148 aaKnown RBP12.43□□□□□ -0.42
USP40-212ENST00000473191 PRNDQ9UKY0 176 aa12.43□□□□□ -0.42
USP40-212ENST00000473191 EPPK1P58107 5090 aaKnown RBP12.43□□□□□ -0.42
USP40-212ENST00000473191 CD3DP04234 171 aa12.42□□□□□ -0.42
USP40-212ENST00000473191 UCP3P55916 312 aa12.42□□□□□ -0.42
USP40-212ENST00000473191 SLC16A13Q7RTY0 426 aa12.42□□□□□ -0.42
USP40-212ENST00000473191 HSD17B13Q7Z5P4 300 aaPredicted RBP12.42□□□□□ -0.42
USP40-212ENST00000473191 LHFPL1Q86WI0 220 aa12.42□□□□□ -0.42
USP40-212ENST00000473191 SLC38A6Q8IZM9 456 aa12.42□□□□□ -0.42
USP40-212ENST00000473191 BSCL2Q96G97 398 aaPredicted RBP12.42□□□□□ -0.42
USP40-212ENST00000473191 TP53RKQ96S44 253 aa12.42□□□□□ -0.42
USP40-212ENST00000473191 C20orf24Q9BUV8 137 aa12.42□□□□□ -0.42
USP40-212ENST00000473191 MIXL1Q9H2W2 232 aa12.42□□□□□ -0.42
USP40-212ENST00000473191 EXTL2Q9UBQ6 330 aa12.42□□□□□ -0.42
USP40-212ENST00000473191 UFC1Q9Y3C8 167 aa12.42□□□□□ -0.42
USP40-212ENST00000473191 I3L2K1 104 aa12.41□□□□□ -0.42
USP40-212ENST00000473191 IGKV1-5P01602 117 aa12.41□□□□□ -0.42
USP40-212ENST00000473191 CTSGP08311 255 aa12.41□□□□□ -0.42
USP40-212ENST00000473191 ELLP55199 621 aaPredicted RBP12.41□□□□□ -0.42
USP40-212ENST00000473191 Q56UQ5 140 aa12.41□□□□□ -0.42
USP40-212ENST00000473191 RBPMS2Q6ZRY4 209 aaKnown RBP12.41□□□□□ -0.42
USP40-212ENST00000473191 OR2C3Q8N628 320 aa12.41□□□□□ -0.42
USP40-212ENST00000473191 OR1L6Q8NGR2 347 aa12.41□□□□□ -0.42
USP40-212ENST00000473191 OR5B3Q8NH48 314 aa12.41□□□□□ -0.42
USP40-212ENST00000473191 MISP3Q96FF7 219 aa12.41□□□□□ -0.42
USP40-212ENST00000473191 PLECQ15149 4684 aaKnown RBP12.41□□□□□ -0.42
USP40-212ENST00000473191 IGHV3-49A0A0A0MS15 119 aa12.4□□□□□ -0.42
USP40-212ENST00000473191 ZNF182P17025 639 aaPredicted RBP12.4□□□□□ -0.42
USP40-212ENST00000473191 SP6Q3SY56 376 aa12.4□□□□□ -0.42
USP40-212ENST00000473191 FAAP20Q6NZ36 180 aa12.4□□□□□ -0.42
USP40-212ENST00000473191 LPCAT3Q6P1A2 487 aa12.4□□□□□ -0.42
USP40-212ENST00000473191 H2BFWTQ7Z2G1 175 aa12.4□□□□□ -0.42
USP40-212ENST00000473191 OR1P1Q8NH06 330 aa12.4□□□□□ -0.42
USP40-212ENST00000473191 OR4A16Q8NH70 328 aa12.4□□□□□ -0.42
USP40-212ENST00000473191 MARC2Q969Z3 335 aa12.4□□□□□ -0.42
USP40-212ENST00000473191 TMEM56Q96MV1 263 aa12.4□□□□□ -0.42
USP40-212ENST00000473191 OVOL2Q9BRP0 275 aa12.4□□□□□ -0.42
USP40-212ENST00000473191 C5orf66Q9H5L9 145 aa12.4□□□□□ -0.42
USP40-212ENST00000473191 DAZ1Q9NQZ3 744 aaKnown RBP12.4□□□□□ -0.42
USP40-212ENST00000473191 A0A0G2JRQ6 117 aa12.39□□□□□ -0.43
USP40-212ENST00000473191 NDUFA4O00483 81 aa12.39□□□□□ -0.43
USP40-212ENST00000473191 P0C879 139 aa12.39□□□□□ -0.43
USP40-212ENST00000473191 PGAM2P15259 253 aa12.39□□□□□ -0.43
USP40-212ENST00000473191 PPP5CP53041 499 aa12.39□□□□□ -0.43
USP40-212ENST00000473191 PIGPP57054 158 aa12.39□□□□□ -0.43
USP40-212ENST00000473191 PRCDQ00LT1 54 aa12.39□□□□□ -0.43
USP40-212ENST00000473191 ODF3L2Q3SX64 289 aa12.39□□□□□ -0.43
USP40-212ENST00000473191 TSC22D3Q99576 134 aa12.39□□□□□ -0.43
USP40-212ENST00000473191 GGTLC1Q9BX51 225 aa12.39□□□□□ -0.43
USP40-212ENST00000473191 FAM212BQ9NTI7 297 aaPredicted RBP12.39□□□□□ -0.43
USP40-212ENST00000473191 FKBP11Q9NYL4 201 aa12.39□□□□□ -0.43
USP40-212ENST00000473191 MTFP1Q9UDX5 166 aa12.39□□□□□ -0.43
USP40-212ENST00000473191 IGHV3OR16-13A0A075B7E8 117 aa12.38□□□□□ -0.43
USP40-212ENST00000473191 LOC102724200A0A096LPH7 203 aaPredicted RBP12.38□□□□□ -0.43
USP40-212ENST00000473191 IGHV3-74A0A0B4J1X5 117 aa12.38□□□□□ -0.43
USP40-212ENST00000473191 TRAV25A0A0B4J276 109 aa12.38□□□□□ -0.43
USP40-212ENST00000473191 A0A0B4J293 547 aa12.38□□□□□ -0.43
USP40-212ENST00000473191 CTDSP2O14595 271 aa12.38□□□□□ -0.43
USP40-212ENST00000473191 TSPAN4O14817 238 aa12.38□□□□□ -0.43
USP40-212ENST00000473191 CYB5BO43169 146 aa12.38□□□□□ -0.43
USP40-212ENST00000473191 MT-CO2P00403 227 aa12.38□□□□□ -0.43
USP40-212ENST00000473191 RND3P61587 244 aa12.38□□□□□ -0.43
USP40-212ENST00000473191 EWSR1Q01844 656 aaKnown RBP eCLIP12.38□□□□□ -0.43
USP40-212ENST00000473191 SPCS2Q15005 226 aa12.38□□□□□ -0.43
USP40-212ENST00000473191 ZNF124Q15973 351 aa12.38□□□□□ -0.43
USP40-212ENST00000473191 RNASE10Q5GAN6 216 aaKnown RBP12.38□□□□□ -0.43
USP40-212ENST00000473191 MZT2AQ6P582 158 aa12.38□□□□□ -0.43
USP40-212ENST00000473191 SPSB3Q6PJ21 355 aa12.38□□□□□ -0.43
USP40-212ENST00000473191 PINX1Q96BK5 328 aaKnown RBP12.38□□□□□ -0.43
USP40-212ENST00000473191 RNF2Q99496 336 aa12.38□□□□□ -0.43
USP40-212ENST00000473191 CTSDP07339 412 aaPredicted RBP12.37□□□□□ -0.43
USP40-212ENST00000473191 S100GP29377 79 aa12.37□□□□□ -0.43
USP40-212ENST00000473191 ALDH3B2P48448 385 aa12.37□□□□□ -0.43
USP40-212ENST00000473191 HSPE1P61604 102 aaKnown RBP12.37□□□□□ -0.43
USP40-212ENST00000473191 ZNF114Q8NC26 417 aa12.37□□□□□ -0.43
USP40-212ENST00000473191 SPAG8Q99932 426 aaPredicted RBP12.37□□□□□ -0.43
USP40-212ENST00000473191 K7EMT4 169 aa12.36□□□□□ -0.43
USP40-212ENST00000473191 ST8SIA3O43173 380 aa12.36□□□□□ -0.43
USP40-212ENST00000473191 ANKRD55Q3KP44 614 aa12.36□□□□□ -0.43
USP40-212ENST00000473191 OR13C8Q8NGS7 320 aa12.36□□□□□ -0.43
USP40-212ENST00000473191 MARCH1Q8TCQ1 289 aa12.36□□□□□ -0.43
USP40-212ENST00000473191 MRPL36Q9P0J6 103 aaKnown RBP12.36□□□□□ -0.43
USP40-212ENST00000473191 SMPXQ9UHP9 88 aa12.36□□□□□ -0.43
USP40-212ENST00000473191 IGKV3-7A0A075B6H7 116 aa12.35□□□□□ -0.43
USP40-212ENST00000473191 C3orf85A0A1B0GTC6 90 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms