RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 WFDC11Q8NEX6 87 aa10.23□□□□□ -0.77
VPS13D-205ENST00000473099 RNF141Q8WVD5 230 aa10.23□□□□□ -0.77
VPS13D-205ENST00000473099 SRSF12Q8WXF0 261 aaKnown RBP10.23□□□□□ -0.77
VPS13D-205ENST00000473099 ITPR3Q14573 2671 aa10.23□□□□□ -0.77
VPS13D-205ENST00000473099 CCDC168Q8NDH2 2452 aa10.23□□□□□ -0.77
VPS13D-205ENST00000473099 AKAP9Q99996 3911 aa10.22□□□□□ -0.77
VPS13D-205ENST00000473099 IGHV3OR16-10A0A075B7F0 116 aa10.22□□□□□ -0.77
VPS13D-205ENST00000473099 CGB1A6NKQ9 187 aa10.22□□□□□ -0.77
VPS13D-205ENST00000473099 UMAD1C9J7I0 102 aa10.22□□□□□ -0.77
VPS13D-205ENST00000473099 CORTO00230 105 aa10.22□□□□□ -0.77
VPS13D-205ENST00000473099 FGF16O43320 207 aa10.22□□□□□ -0.77
VPS13D-205ENST00000473099 AVPP01185 164 aa10.22□□□□□ -0.77
VPS13D-205ENST00000473099 FSHBP01225 129 aa10.22□□□□□ -0.77
VPS13D-205ENST00000473099 HLA-DRB1P01911 266 aa10.22□□□□□ -0.77
VPS13D-205ENST00000473099 OR13C7P0DN81 318 aa10.22□□□□□ -0.77
VPS13D-205ENST00000473099 RNASE2P10153 161 aaKnown RBP10.22□□□□□ -0.77
VPS13D-205ENST00000473099 CD24P25063 80 aa10.22□□□□□ -0.77
VPS13D-205ENST00000473099 GNB1P62873 340 aa10.22□□□□□ -0.77
VPS13D-205ENST00000473099 C9orf139Q6ZV77 190 aa10.22□□□□□ -0.77
VPS13D-205ENST00000473099 HSD17B11Q8NBQ5 300 aa10.22□□□□□ -0.77
VPS13D-205ENST00000473099 OR10W1Q8NGF6 305 aa10.22□□□□□ -0.77
VPS13D-205ENST00000473099 OR1L6Q8NGR2 347 aa10.22□□□□□ -0.77
VPS13D-205ENST00000473099 RNASEH2CQ8TDP1 164 aaKnown RBP10.22□□□□□ -0.77
VPS13D-205ENST00000473099 TMED6Q8WW62 240 aa10.22□□□□□ -0.77
VPS13D-205ENST00000473099 RBMXL1Q96E39 390 aaKnown RBP10.22□□□□□ -0.77
VPS13D-205ENST00000473099 RASL11BQ9BPW5 248 aa10.22□□□□□ -0.77
VPS13D-205ENST00000473099 PSMG3Q9BT73 122 aaPredicted RBP10.22□□□□□ -0.77
VPS13D-205ENST00000473099 TIMM9Q9Y5J7 89 aa10.22□□□□□ -0.77
VPS13D-205ENST00000473099 IGLC7A0M8Q6 106 aa10.21□□□□□ -0.77
VPS13D-205ENST00000473099 PRSS46E5RG02 174 aa10.21□□□□□ -0.77
VPS13D-205ENST00000473099 TRIM77I1YAP6 450 aa10.21□□□□□ -0.77
VPS13D-205ENST00000473099 M0QZK8 103 aa10.21□□□□□ -0.77
VPS13D-205ENST00000473099 CYB5BO43169 146 aa10.21□□□□□ -0.77
VPS13D-205ENST00000473099 FBXO24O75426 580 aa10.21□□□□□ -0.77
VPS13D-205ENST00000473099 PAX6P26367 422 aa10.21□□□□□ -0.77
VPS13D-205ENST00000473099 ATP6V0CP27449 155 aa10.21□□□□□ -0.77
VPS13D-205ENST00000473099 GPX4P36969 197 aaPredicted RBP10.21□□□□□ -0.77
VPS13D-205ENST00000473099 SULT1A2P50226 295 aa10.21□□□□□ -0.77
VPS13D-205ENST00000473099 WT1-ASQ06250 92 aa10.21□□□□□ -0.77
VPS13D-205ENST00000473099 FXYD3Q14802 87 aa10.21□□□□□ -0.77
VPS13D-205ENST00000473099 C10orf55Q5SWW7 151 aa10.21□□□□□ -0.77
VPS13D-205ENST00000473099 Q8N9W7 124 aa10.21□□□□□ -0.77
VPS13D-205ENST00000473099 CACNG8Q8WXS5 425 aa10.21□□□□□ -0.77
VPS13D-205ENST00000473099 SAT2Q96F10 170 aaPredicted RBP10.21□□□□□ -0.77
VPS13D-205ENST00000473099 RBM14Q96PK6 669 aaKnown RBP10.21□□□□□ -0.77
VPS13D-205ENST00000473099 SSX3Q99909 188 aa10.21□□□□□ -0.77
VPS13D-205ENST00000473099 WDR61Q9GZS3 305 aaKnown RBP10.21□□□□□ -0.77
VPS13D-205ENST00000473099 NPVFQ9HCQ7 196 aa10.21□□□□□ -0.77
VPS13D-205ENST00000473099 KCNIP2Q9NS61 270 aa10.21□□□□□ -0.77
VPS13D-205ENST00000473099 MOB4Q9Y3A3 225 aa10.21□□□□□ -0.77
VPS13D-205ENST00000473099 MAP1AP78559 2803 aaPredicted RBP10.2□□□□□ -0.78
VPS13D-205ENST00000473099 UBE2L5PA0A1B0GUS4 154 aa10.2□□□□□ -0.78
VPS13D-205ENST00000473099 RPS10-NUDT3A0A1W2PQS6 291 aa10.2□□□□□ -0.78
VPS13D-205ENST00000473099 TEX22C9J3V5 150 aa10.2□□□□□ -0.78
VPS13D-205ENST00000473099 E7EUB6 86 aa10.2□□□□□ -0.78
VPS13D-205ENST00000473099 C17orf112F2Z3M2 114 aa10.2□□□□□ -0.78
VPS13D-205ENST00000473099 BLOC1S1P78537 153 aa10.2□□□□□ -0.78
VPS13D-205ENST00000473099 SERF2P84101 59 aa10.2□□□□□ -0.78
VPS13D-205ENST00000473099 TUSC1Q2TAM9 212 aa10.2□□□□□ -0.78
VPS13D-205ENST00000473099 FAM120AOSQ5T036 256 aa10.2□□□□□ -0.78
VPS13D-205ENST00000473099 ETFRF1Q6IPR1 90 aa10.2□□□□□ -0.78
VPS13D-205ENST00000473099 ZNF709Q8N972 641 aa10.2□□□□□ -0.78
VPS13D-205ENST00000473099 OR1P1Q8NH06 330 aa10.2□□□□□ -0.78
VPS13D-205ENST00000473099 ABHD5Q8WTS1 349 aa10.2□□□□□ -0.78
VPS13D-205ENST00000473099 TMEM170AQ8WVE7 144 aa10.2□□□□□ -0.78
VPS13D-205ENST00000473099 ARPC1AQ92747 370 aa10.2□□□□□ -0.78
VPS13D-205ENST00000473099 TAF15Q92804 592 aaKnown RBP eCLIP10.2□□□□□ -0.78
VPS13D-205ENST00000473099 SLC25A33Q9BSK2 321 aa10.2□□□□□ -0.78
VPS13D-205ENST00000473099 VPS13CQ709C8 3753 aa10.19□□□□□ -0.78
VPS13D-205ENST00000473099 A0A1B0GW64 132 aa10.19□□□□□ -0.78
VPS13D-205ENST00000473099 FCN1O00602 326 aa10.19□□□□□ -0.78
VPS13D-205ENST00000473099 NMBP08949 121 aa10.19□□□□□ -0.78
VPS13D-205ENST00000473099 SSBP2P81877 361 aaPredicted RBP10.19□□□□□ -0.78
VPS13D-205ENST00000473099 RAB31Q13636 194 aa10.19□□□□□ -0.78
VPS13D-205ENST00000473099 PVRIGQ6DKI7 326 aa10.19□□□□□ -0.78
VPS13D-205ENST00000473099 DPPA3Q6W0C5 159 aa10.19□□□□□ -0.78
VPS13D-205ENST00000473099 CENPVQ7Z7K6 275 aaPredicted RBP10.19□□□□□ -0.78
VPS13D-205ENST00000473099 OR2G3Q8NGZ4 309 aa10.19□□□□□ -0.78
VPS13D-205ENST00000473099 OR5R1Q8NH85 324 aa10.19□□□□□ -0.78
VPS13D-205ENST00000473099 SSMEM1Q8WWF3 244 aa10.19□□□□□ -0.78
VPS13D-205ENST00000473099 TMEM68Q96MH6 324 aa10.19□□□□□ -0.78
VPS13D-205ENST00000473099 P2RX4Q99571 388 aa10.19□□□□□ -0.78
VPS13D-205ENST00000473099 WDR83OSQ9Y284 106 aa10.19□□□□□ -0.78
VPS13D-205ENST00000473099 FBXO7Q9Y3I1 522 aa10.19□□□□□ -0.78
VPS13D-205ENST00000473099 F11RQ9Y624 299 aaKnown RBP10.19□□□□□ -0.78
VPS13D-205ENST00000473099 HIVEP1P15822 2718 aa10.19□□□□□ -0.78
VPS13D-205ENST00000473099 LINC00862A6NCI5 91 aa10.18□□□□□ -0.78
VPS13D-205ENST00000473099 BTBD17A6NE02 478 aa10.18□□□□□ -0.78
VPS13D-205ENST00000473099 H3BUX3 64 aa10.18□□□□□ -0.78
VPS13D-205ENST00000473099 MDKP21741 143 aaPredicted RBP10.18□□□□□ -0.78
VPS13D-205ENST00000473099 FGF7P21781 194 aa10.18□□□□□ -0.78
VPS13D-205ENST00000473099 CX3CL1P78423 397 aa10.18□□□□□ -0.78
VPS13D-205ENST00000473099 CD69Q07108 199 aa10.18□□□□□ -0.78
VPS13D-205ENST00000473099 FAM74A1Q5RGS3 127 aa10.18□□□□□ -0.78
VPS13D-205ENST00000473099 AKR1C8PQ5T2L2 129 aa10.18□□□□□ -0.78
VPS13D-205ENST00000473099 C5orf56Q8N8D9 126 aa10.18□□□□□ -0.78
VPS13D-205ENST00000473099 PIFOQ8TCI5 191 aa10.18□□□□□ -0.78
VPS13D-205ENST00000473099 C22orf15Q8WYQ4 148 aa10.18□□□□□ -0.78
VPS13D-205ENST00000473099 SLC35E1Q96K37 410 aa10.18□□□□□ -0.78
VPS13D-205ENST00000473099 MED9Q9NWA0 146 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms