RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 K7EIM0 57 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 TGOLN2O43493 480 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 B3GALNT1O75752 331 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 ATG12O94817 140 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 IGKV1-5P01602 117 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 CTSDP07339 412 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-221ENST00000472563 P0C879 139 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 EDN2P20800 178 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 PPP5CP53041 499 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 ELLP55199 621 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-221ENST00000472563 PRCDQ00LT1 54 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 IL18Q14116 193 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 SURF2Q15527 256 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-221ENST00000472563 SCGB2B2Q4G0G5 96 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 SPSB3Q6PJ21 355 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 OR2C3Q8N628 320 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 CCDC71LQ8N9Z2 235 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 OR13C8Q8NGS7 320 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 SCARB1Q8WTV0 552 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 MARC2Q969Z3 335 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 ISOC1Q96CN7 298 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 BSCL2Q96G97 398 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-221ENST00000472563 RCHY1Q96PM5 261 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 TP53RKQ96S44 253 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 TM2D3Q9BRN9 247 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 SLIRPQ9GZT3 109 aaKnown RBP9.03□□□□□ -0.96
SYNE1-221ENST00000472563 ZMAT4Q9H898 229 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 PALMDQ9NP74 551 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 C21orf62Q9NYP8 219 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 COPZ2Q9P299 210 aa9.03□□□□□ -0.96
SYNE1-221ENST00000472563 RSL24D1Q9UHA3 163 aaKnown RBP9.03□□□□□ -0.96
SYNE1-221ENST00000472563 DISC1C4P0D8 188 aa9.02□□□□□ -0.97
SYNE1-221ENST00000472563 GSTZ1O43708 216 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-221ENST00000472563 C8orf88P0DMB2 117 aa9.02□□□□□ -0.97
SYNE1-221ENST00000472563 UCP1P25874 307 aa9.02□□□□□ -0.97
SYNE1-221ENST00000472563 UNQ9165/PRO28630Q6UXU0 137 aa9.02□□□□□ -0.97
SYNE1-221ENST00000472563 UXS1Q8NBZ7 420 aa9.02□□□□□ -0.97
SYNE1-221ENST00000472563 ZNF114Q8NC26 417 aa9.02□□□□□ -0.97
SYNE1-221ENST00000472563 MARCH1Q8TCQ1 289 aa9.02□□□□□ -0.97
SYNE1-221ENST00000472563 CACNG8Q8WXS5 425 aa9.02□□□□□ -0.97
SYNE1-221ENST00000472563 SOSTQ9BQB4 213 aa9.02□□□□□ -0.97
SYNE1-221ENST00000472563 ZNF436Q9C0F3 470 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-221ENST00000472563 C6orf62Q9GZU0 229 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-221ENST00000472563 TUBA4BQ9H853 241 aa9.02□□□□□ -0.97
SYNE1-221ENST00000472563 SLC2A8Q9NY64 477 aa9.02□□□□□ -0.97
SYNE1-221ENST00000472563 MRPL27Q9P0M9 148 aaKnown RBP9.02□□□□□ -0.97
SYNE1-221ENST00000472563 UFC1Q9Y3C8 167 aa9.02□□□□□ -0.97
SYNE1-221ENST00000472563 NBEAL2Q6ZNJ1 2754 aa9.02□□□□□ -0.97
SYNE1-221ENST00000472563 A0A0B4J293 547 aa9.01□□□□□ -0.97
SYNE1-221ENST00000472563 IGHV3-35A0A0C4DH35 117 aa9.01□□□□□ -0.97
SYNE1-221ENST00000472563 OR2T8A6NH00 312 aa9.01□□□□□ -0.97
SYNE1-221ENST00000472563 F8W735 103 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-221ENST00000472563 AKAIN1P0CW23 69 aa9.01□□□□□ -0.97
SYNE1-221ENST00000472563 TNFSF8P32971 234 aa9.01□□□□□ -0.97
SYNE1-221ENST00000472563 CD81P60033 236 aa9.01□□□□□ -0.97
SYNE1-221ENST00000472563 GUCA2BQ16661 112 aa9.01□□□□□ -0.97
SYNE1-221ENST00000472563 IZUMO4Q1ZYL8 232 aa9.01□□□□□ -0.97
SYNE1-221ENST00000472563 TRIM16LQ309B1 348 aa9.01□□□□□ -0.97
SYNE1-221ENST00000472563 SP6Q3SY56 376 aa9.01□□□□□ -0.97
SYNE1-221ENST00000472563 TM4SF20Q53R12 229 aa9.01□□□□□ -0.97
SYNE1-221ENST00000472563 ZNF57Q68EA5 555 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-221ENST00000472563 FAAP20Q6NZ36 180 aa9.01□□□□□ -0.97
SYNE1-221ENST00000472563 TMEM61Q8N0U2 210 aa9.01□□□□□ -0.97
SYNE1-221ENST00000472563 TMEM190Q8WZ59 177 aa9.01□□□□□ -0.97
SYNE1-221ENST00000472563 PRRT1Q99946 306 aa9.01□□□□□ -0.97
SYNE1-221ENST00000472563 NEURL2Q9BR09 285 aa9.01□□□□□ -0.97
SYNE1-221ENST00000472563 RTBDNQ9BSG5 229 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-221ENST00000472563 NXF2Q9GZY0 626 aaKnown RBP9.01□□□□□ -0.97
SYNE1-221ENST00000472563 PLEKHA3Q9HB20 300 aa9.01□□□□□ -0.97
SYNE1-221ENST00000472563 GAR1Q9NY12 217 aaKnown RBP9.01□□□□□ -0.97
SYNE1-221ENST00000472563 MLXQ9UH92 298 aa9.01□□□□□ -0.97
SYNE1-221ENST00000472563 CEPT1Q9Y6K0 416 aa9.01□□□□□ -0.97
SYNE1-221ENST00000472563 IGHV3-21A0A0B4J1V1 117 aa9□□□□□ -0.97
SYNE1-221ENST00000472563 TRAV25A0A0B4J276 109 aa9□□□□□ -0.97
SYNE1-221ENST00000472563 ANKRD20A5PA0PJZ0 165 aa9□□□□□ -0.97
SYNE1-221ENST00000472563 FABP12A6NFH5 140 aa9□□□□□ -0.97
SYNE1-221ENST00000472563 INS-IGF2F8WCM5 200 aa9□□□□□ -0.97
SYNE1-221ENST00000472563 I3L2K1 104 aa9□□□□□ -0.97
SYNE1-221ENST00000472563 NDUFA4O00483 81 aa9□□□□□ -0.97
SYNE1-221ENST00000472563 CDS2O95674 445 aa9□□□□□ -0.97
SYNE1-221ENST00000472563 CTSGP08311 255 aa9□□□□□ -0.97
SYNE1-221ENST00000472563 CD7P09564 240 aa9□□□□□ -0.97
SYNE1-221ENST00000472563 ADMP35318 185 aa9□□□□□ -0.97
SYNE1-221ENST00000472563 AKR1C2P52895 323 aa9□□□□□ -0.97
SYNE1-221ENST00000472563 ERHP84090 104 aaKnown RBP9□□□□□ -0.97
SYNE1-221ENST00000472563 HAGHQ16775 308 aa9□□□□□ -0.97
SYNE1-221ENST00000472563 LINC00322Q6ZN03 302 aaPredicted RBP9□□□□□ -0.97
SYNE1-221ENST00000472563 OR4C16Q8NGL9 310 aa9□□□□□ -0.97
SYNE1-221ENST00000472563 MCFD2Q8NI22 146 aa9□□□□□ -0.97
SYNE1-221ENST00000472563 RRNAD1Q96FB5 475 aaKnown RBP9□□□□□ -0.97
SYNE1-221ENST00000472563 WDR89Q96FK6 387 aaPredicted RBP9□□□□□ -0.97
SYNE1-221ENST00000472563 TXN2Q99757 166 aa9□□□□□ -0.97
SYNE1-221ENST00000472563 CHRDL1Q9BU40 450 aa9□□□□□ -0.97
SYNE1-221ENST00000472563 TMEM222Q9H0R3 208 aa9□□□□□ -0.97
SYNE1-221ENST00000472563 GPR132Q9UNW8 380 aa9□□□□□ -0.97
SYNE1-221ENST00000472563 C14orf166Q9Y224 244 aaKnown RBP9□□□□□ -0.97
SYNE1-221ENST00000472563 RYR3Q15413 4870 aa9□□□□□ -0.97
SYNE1-221ENST00000472563 TEX13DA0A0J9YY54 714 aaPredicted RBP8.99□□□□□ -0.97
SYNE1-221ENST00000472563 ST8SIA3O43173 380 aa8.99□□□□□ -0.97
SYNE1-221ENST00000472563 FCGR2BP31994 310 aaPredicted RBP8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms